{"title":"Explainable Deep Learning for Glaucomatous Visual Field Prediction: Artifact Correction Enhances Transformer Models.","authors":"Kornchanok Sriwatana, Chanon Puttanawarut, Yanin Suwan, Titipat Achakulvisut","doi":"10.1167/tvst.14.1.22","DOIUrl":null,"url":null,"abstract":"<p><strong>Purpose: </strong>The purpose of this study was to develop a deep learning approach that restores artifact-laden optical coherence tomography (OCT) scans and predicts functional loss on the 24-2 Humphrey Visual Field (HVF) test.</p><p><strong>Methods: </strong>This cross-sectional, retrospective study used 1674 visual field (VF)-OCT pairs from 951 eyes for training and 429 pairs from 345 eyes for testing. Peripapillary retinal nerve fiber layer (RNFL) thickness map artifacts were corrected using a generative diffusion model. Three convolutional neural networks and 2 transformer-based models were trained on original and artifact-corrected datasets to estimate 54 sensitivity thresholds of the 24-2 HVF test.</p><p><strong>Results: </strong>Predictive performances were calculated using root mean square error (RMSE) and mean absolute error (MAE), with explainability evaluated through GradCAM, attention maps, and dimensionality reduction techniques. The Distillation with No Labels (DINO) Vision Transformers (ViT) trained on artifact-corrected datasets achieved the highest accuracy (RMSE, 95% confidence interval [CI] = 4.44, 95% CI = 4.07, 4.82 decibel [dB], MAE = 3.46, 95% CI = 3.14, 3.79 dB), and the greatest interpretability, showing improvements of 0.15 dB in global RMSE and MAE (P < 0.05) compared to the performance on original maps. Feature maps and visualization tools indicate that artifacts compromise DINO-ViT's predictive ability but improve with artifact correction.</p><p><strong>Conclusions: </strong>Combining self-supervised ViTs with generative artifact correction enhances the correlation between glaucomatous structures and functions.</p><p><strong>Translational relevance: </strong>Our approach offers a comprehensive tool for glaucoma management, facilitates the exploration of structure-function correlations in research, and underscores the importance of addressing artifacts in the clinical interpretation of OCT.</p>","PeriodicalId":23322,"journal":{"name":"Translational Vision Science & Technology","volume":"14 1","pages":"22"},"PeriodicalIF":2.6000,"publicationDate":"2025-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11758932/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Translational Vision Science & Technology","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1167/tvst.14.1.22","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"OPHTHALMOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Purpose: The purpose of this study was to develop a deep learning approach that restores artifact-laden optical coherence tomography (OCT) scans and predicts functional loss on the 24-2 Humphrey Visual Field (HVF) test.
Methods: This cross-sectional, retrospective study used 1674 visual field (VF)-OCT pairs from 951 eyes for training and 429 pairs from 345 eyes for testing. Peripapillary retinal nerve fiber layer (RNFL) thickness map artifacts were corrected using a generative diffusion model. Three convolutional neural networks and 2 transformer-based models were trained on original and artifact-corrected datasets to estimate 54 sensitivity thresholds of the 24-2 HVF test.
Results: Predictive performances were calculated using root mean square error (RMSE) and mean absolute error (MAE), with explainability evaluated through GradCAM, attention maps, and dimensionality reduction techniques. The Distillation with No Labels (DINO) Vision Transformers (ViT) trained on artifact-corrected datasets achieved the highest accuracy (RMSE, 95% confidence interval [CI] = 4.44, 95% CI = 4.07, 4.82 decibel [dB], MAE = 3.46, 95% CI = 3.14, 3.79 dB), and the greatest interpretability, showing improvements of 0.15 dB in global RMSE and MAE (P < 0.05) compared to the performance on original maps. Feature maps and visualization tools indicate that artifacts compromise DINO-ViT's predictive ability but improve with artifact correction.
Conclusions: Combining self-supervised ViTs with generative artifact correction enhances the correlation between glaucomatous structures and functions.
Translational relevance: Our approach offers a comprehensive tool for glaucoma management, facilitates the exploration of structure-function correlations in research, and underscores the importance of addressing artifacts in the clinical interpretation of OCT.
期刊介绍:
Translational Vision Science & Technology (TVST), an official journal of the Association for Research in Vision and Ophthalmology (ARVO), an international organization whose purpose is to advance research worldwide into understanding the visual system and preventing, treating and curing its disorders, is an online, open access, peer-reviewed journal emphasizing multidisciplinary research that bridges the gap between basic research and clinical care. A highly qualified and diverse group of Associate Editors and Editorial Board Members is led by Editor-in-Chief Marco Zarbin, MD, PhD, FARVO.
The journal covers a broad spectrum of work, including but not limited to:
Applications of stem cell technology for regenerative medicine,
Development of new animal models of human diseases,
Tissue bioengineering,
Chemical engineering to improve virus-based gene delivery,
Nanotechnology for drug delivery,
Design and synthesis of artificial extracellular matrices,
Development of a true microsurgical operating environment,
Refining data analysis algorithms to improve in vivo imaging technology,
Results of Phase 1 clinical trials,
Reverse translational ("bedside to bench") research.
TVST seeks manuscripts from scientists and clinicians with diverse backgrounds ranging from basic chemistry to ophthalmic surgery that will advance or change the way we understand and/or treat vision-threatening diseases. TVST encourages the use of color, multimedia, hyperlinks, program code and other digital enhancements.