{"title":"Rela2x: Analytic and automatic NMR relaxation theory","authors":"Perttu Hilla, Juha Vaara","doi":"10.1016/j.jmr.2024.107828","DOIUrl":null,"url":null,"abstract":"<div><div>Spin relaxation is modelled using the so-called relaxation superoperator <span><math><mover><mrow><mover><mrow><mi>Γ</mi></mrow><mrow><mo>ˆ</mo></mrow></mover></mrow><mrow><mo>ˆ</mo></mrow></mover></math></span>. Analytic forms of <span><math><mover><mrow><mover><mrow><mi>Γ</mi></mrow><mrow><mo>ˆ</mo></mrow></mover></mrow><mrow><mo>ˆ</mo></mrow></mover></math></span> have been derived in the literature in the simplest cases of one- or two-spin systems, with <span><math><mrow><mi>S</mi><mo>=</mo><mfrac><mrow><mn>1</mn></mrow><mrow><mn>2</mn></mrow></mfrac></mrow></math></span> nuclei and no more than two different simultaneous relaxation mechanisms involved. Beyond that, for systems of more than two spins, with <span><math><mrow><mi>S</mi><mo>></mo><mfrac><mrow><mn>1</mn></mrow><mrow><mn>2</mn></mrow></mfrac></mrow></math></span> and/or multiple relaxation mechanisms at play, the derivations become notoriously complicated, which is why analytic relaxation theory has mostly been considered a dead end. Instead, numerical methods of constructing <span><math><mover><mrow><mover><mrow><mi>Γ</mi></mrow><mrow><mo>ˆ</mo></mrow></mover></mrow><mrow><mo>ˆ</mo></mrow></mover></math></span> have been popular. However, they lack some of the physical, chemical and pedagogical insight that can be provided by analytic expressions. To this end, we present a general, interactive and freely available Python programme, named <span>Rela<sup>2</sup>x</span>, to automatically compute the analytic matrix representation of <span><math><mover><mrow><mover><mrow><mi>Γ</mi></mrow><mrow><mo>ˆ</mo></mrow></mover></mrow><mrow><mo>ˆ</mo></mrow></mover></math></span> for high-field NMR. Tools to analyse, approximate and visualize <span><math><mover><mrow><mover><mrow><mi>Γ</mi></mrow><mrow><mo>ˆ</mo></mrow></mover></mrow><mrow><mo>ˆ</mo></mrow></mover></math></span> are built into <span>Rela<sup>2</sup>x</span>. As a demonstration of the functionality, <span><math><mover><mrow><mover><mrow><mi>Γ</mi></mrow><mrow><mo>ˆ</mo></mrow></mover></mrow><mrow><mo>ˆ</mo></mrow></mover></math></span> is presented both for the familiar dipole–dipole coupled <span><math><msup><mrow></mrow><mrow><mn>1</mn></mrow></msup></math></span>H-<span><math><msup><mrow></mrow><mrow><mn>1</mn></mrow></msup></math></span>H spin system and for more complicated <span><math><msup><mrow></mrow><mrow><mn>1</mn></mrow></msup></math></span>H-<sup>14</sup>N and <span><math><msup><mrow></mrow><mrow><mn>1</mn></mrow></msup></math></span>H-<sup>13</sup>C-<sup>14</sup>N systems with dipole–dipole coupling, chemical shift anisotropy and quadrupole interaction. We envision that the code will provide much-needed clarity in the form of a helpful tool for the study of relaxation effects, and constitute a reference source for scientists in the field of NMR.</div></div>","PeriodicalId":16267,"journal":{"name":"Journal of magnetic resonance","volume":"372 ","pages":"Article 107828"},"PeriodicalIF":2.0000,"publicationDate":"2025-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of magnetic resonance","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S109078072400212X","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
Spin relaxation is modelled using the so-called relaxation superoperator . Analytic forms of have been derived in the literature in the simplest cases of one- or two-spin systems, with nuclei and no more than two different simultaneous relaxation mechanisms involved. Beyond that, for systems of more than two spins, with and/or multiple relaxation mechanisms at play, the derivations become notoriously complicated, which is why analytic relaxation theory has mostly been considered a dead end. Instead, numerical methods of constructing have been popular. However, they lack some of the physical, chemical and pedagogical insight that can be provided by analytic expressions. To this end, we present a general, interactive and freely available Python programme, named Rela2x, to automatically compute the analytic matrix representation of for high-field NMR. Tools to analyse, approximate and visualize are built into Rela2x. As a demonstration of the functionality, is presented both for the familiar dipole–dipole coupled H-H spin system and for more complicated H-14N and H-13C-14N systems with dipole–dipole coupling, chemical shift anisotropy and quadrupole interaction. We envision that the code will provide much-needed clarity in the form of a helpful tool for the study of relaxation effects, and constitute a reference source for scientists in the field of NMR.
期刊介绍:
The Journal of Magnetic Resonance presents original technical and scientific papers in all aspects of magnetic resonance, including nuclear magnetic resonance spectroscopy (NMR) of solids and liquids, electron spin/paramagnetic resonance (EPR), in vivo magnetic resonance imaging (MRI) and spectroscopy (MRS), nuclear quadrupole resonance (NQR) and magnetic resonance phenomena at nearly zero fields or in combination with optics. The Journal''s main aims include deepening the physical principles underlying all these spectroscopies, publishing significant theoretical and experimental results leading to spectral and spatial progress in these areas, and opening new MR-based applications in chemistry, biology and medicine. The Journal also seeks descriptions of novel apparatuses, new experimental protocols, and new procedures of data analysis and interpretation - including computational and quantum-mechanical methods - capable of advancing MR spectroscopy and imaging.