A simple and highly efficient protocol for 13C-labeling of plant cell wall for structural and quantitative analyses via solid-state nuclear magnetic resonance.

IF 4.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Tasleem Javaid, Akshayaa Venkataraghavan, Matrika Bhattarai, Debkumar Debnath, Wancheng Zhao, Tuo Wang, Ahmed Faik
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Abstract

Background: Plant cell walls are made of a complex network of interacting polymers that play a critical role in plant development and responses to environmental changes. Thus, improving plant biomass and fitness requires the elucidation of the structural organization of plant cell walls in their native environment. The 13C-based multi-dimensional solid-state nuclear magnetic resonance (ssNMR) has been instrumental in revealing the structural information of plant cell walls through 2D and 3D correlation spectral analyses. However, the requirement of enriching plants with 13C limits the applicability of this method. To our knowledge, there is only a very limited set of methods currently available that achieve high levels of 13C-labeling of plant materials using 13CO2, and most of them require large amounts of 13CO2 in larger growth chambers.

Results: In this study, a simplified protocol for 13C-labeling of plant materials is introduced that allows ca 60% labeling of the cell walls, as quantified by comparison with commercially labeled samples. This level of 13C-enrichment is sufficient for all conventional 2D and 3D correlation ssNMR experiments for detailed analysis of plant cell wall structure. The protocol is based on a convenient and easy setup to supply both 13C-labeled glucose and 13CO2 using a vacuum-desiccator. The protocol does not require large amounts of 13CO2.

Conclusion: This study shows that our 13C-labeling of plant materials can make the accessibility to ssNMR technique easy and affordable. The derived high-resolution 2D and 3D correlation spectra are used to extract structural information of plant cell walls. This helps to better understand the influence of polysaccharide-polysaccharide interaction on plant performance and allows for a more precise parametrization of plant cell wall models.

一种简单高效的植物细胞壁13c标记方案,用于固体核磁共振结构和定量分析。
背景:植物细胞壁是由相互作用的聚合物组成的复杂网络,在植物发育和对环境变化的响应中起着关键作用。因此,提高植物生物量和适应性需要阐明植物细胞壁在其原生环境中的结构组织。基于13c的多维固态核磁共振(ssNMR)通过二维和三维相关光谱分析揭示了植物细胞壁的结构信息。然而,植物对13C富集的要求限制了该方法的适用性。据我们所知,目前只有一组非常有限的方法可以使用13CO2来实现高水平的植物材料13c标记,并且大多数方法都需要在较大的生长室中使用大量的13CO2。结果:在本研究中,引入了一种简化的植物材料13c标记方案,通过与商业标记的样品进行比较,可以对细胞壁进行约60%的标记。这种水平的13c富集足以用于所有常规的2D和3D相关ssNMR实验,以详细分析植物细胞壁结构。该方案是基于一个方便和简单的设置,提供13c标记的葡萄糖和13CO2使用真空干燥器。该协议不需要大量的二氧化碳。结论:本研究表明我们对植物材料的13c标记可以使ssNMR技术的可及性变得简单和经济。利用得到的高分辨率二维和三维相关光谱提取植物细胞壁的结构信息。这有助于更好地理解多糖-多糖相互作用对植物性能的影响,并允许更精确的植物细胞壁模型参数化。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Plant Methods
Plant Methods 生物-植物科学
CiteScore
9.20
自引率
3.90%
发文量
121
审稿时长
2 months
期刊介绍: Plant Methods is an open access, peer-reviewed, online journal for the plant research community that encompasses all aspects of technological innovation in the plant sciences. There is no doubt that we have entered an exciting new era in plant biology. The completion of the Arabidopsis genome sequence, and the rapid progress being made in other plant genomics projects are providing unparalleled opportunities for progress in all areas of plant science. Nevertheless, enormous challenges lie ahead if we are to understand the function of every gene in the genome, and how the individual parts work together to make the whole organism. Achieving these goals will require an unprecedented collaborative effort, combining high-throughput, system-wide technologies with more focused approaches that integrate traditional disciplines such as cell biology, biochemistry and molecular genetics. Technological innovation is probably the most important catalyst for progress in any scientific discipline. Plant Methods’ goal is to stimulate the development and adoption of new and improved techniques and research tools and, where appropriate, to promote consistency of methodologies for better integration of data from different laboratories.
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