Exploring the causal role of plasma metabolites and metabolite ratios in prostate cancer: a two-sample Mendelian randomization study.

IF 3.9 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Frontiers in Molecular Biosciences Pub Date : 2025-01-06 eCollection Date: 2024-01-01 DOI:10.3389/fmolb.2024.1406055
Changzhou Feng, Haining Li, Chu Zhang, Ying Zhou, Huanhuan Zhang, Ping Zheng, Shaolin Zhao, Lei Wang, Jin Yang
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引用次数: 0

Abstract

Background: Prostate cancer (PCa), the most prevalent malignant neoplasm in males, involves complex biological mechanisms and risk factors, many of which remain unidentified. By employing a novel two-sample Mendelian randomization (MR) approach, this study aims to elucidate the causal relationships between the circulating metabolome and PCa risk, utilizing comprehensive data on genetically determined plasma metabolites and metabolite ratios.

Methods: For the MR analysis, we utilized data from the GWAS Catalog database to analyze 1,091 plasma metabolites and 309 ratios in relation to PCa outcomes within two independent GWAS datasets. The inverse variance weighted (IVW) method was the primary approach for determining the existence of the causal relationship, supplemented by additional MR methods for heterogeneity, pleiotropy, and cross-validation. The false discovery rate (FDR) and Bonferroni correction were applied to identify the most significant causative associations. Additionally, reverse MR and Steiger filtering were conducted to ascertain whether PCa influenced the observed metabolite levels. Furthermore, metabolic pathway analysis was conducted with MetaboAnalyst 6.0 software.

Results: In the MR analysis, our findings reveal three overlapped metabolite ratios (arginine to glutamate, phosphate to uridine, and glycerol to mannitol/sorbitol) inversely associated with PCa risk. Following FDR correction (FDR < 0.05), cysteinylglycine disulfide was identified as a potential reducer of PCa risk, whereas Uridine and N-acetyl-L-glutamine (NAG) were pinpointed as potential risk factors. Notably, NAG (OR 1.044; 95% CI 1.025-1.063) emerged as a metabolite with significant causal influence, as confirmed by stringent Bonferroni correction (P < 0.05/1400). Steiger's directionality test (P < 0.001) and reverse MR confirmed the proposed causal direction. Furthermore, metabolic pathway analysis revealed a significant association between the "Glutathione Metabolism" pathway and PCa development.

Conclusion: This study provides novel insights into the potential causal effects of plasma metabolites and metabolite ratios on PCa. The identified metabolites and ratios could serve as candidate biomarkers, contributing to the elucidation of PCa's biological mechanisms.

探讨血浆代谢物和代谢物比率在前列腺癌中的因果作用:一项双样本孟德尔随机化研究。
背景:前列腺癌(PCa)是男性最常见的恶性肿瘤,涉及复杂的生物学机制和危险因素,其中许多尚未确定。通过采用一种新的双样本孟德尔随机化(MR)方法,本研究旨在阐明循环代谢组与PCa风险之间的因果关系,利用遗传决定的血浆代谢物和代谢物比率的综合数据。方法:在MR分析中,我们利用来自GWAS目录数据库的数据,分析了两个独立GWAS数据集中1091种血浆代谢物和309种与PCa结果相关的比率。反方差加权(IVW)方法是确定因果关系存在的主要方法,辅以额外的MR方法进行异质性、多效性和交叉验证。错误发现率(FDR)和Bonferroni校正应用于确定最显著的病因关联。此外,进行反向MR和Steiger滤波以确定PCa是否影响观察到的代谢物水平。利用代谢分析软件MetaboAnalyst 6.0进行代谢途径分析。结果:在磁共振分析中,我们的发现揭示了三种重叠的代谢物比率(精氨酸与谷氨酸、磷酸与尿苷、甘油与甘露醇/山梨醇)与PCa风险呈负相关。FDR校正(FDR < 0.05)后,半胱氨酸二硫氨酸被确定为前列腺癌风险的潜在降低剂,而尿嘧啶和n -乙酰- l-谷氨酰胺(NAG)被确定为潜在的危险因素。值得注意的是,NAG (OR 1.044;经严格的Bonferroni校正(P < 0.05/1400)证实,95% CI 1.025-1.063)是具有显著因果影响的代谢物。Steiger’s方向性检验(P < 0.001)和反向MR证实了所提出的因果方向。此外,代谢途径分析揭示了“谷胱甘肽代谢”途径与PCa发展之间的显著关联。结论:本研究为血浆代谢物和代谢物比例对PCa的潜在因果关系提供了新的见解。所鉴定的代谢产物和比例可作为候选生物标志物,有助于阐明PCa的生物学机制。
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来源期刊
Frontiers in Molecular Biosciences
Frontiers in Molecular Biosciences Biochemistry, Genetics and Molecular Biology-Biochemistry
CiteScore
7.20
自引率
4.00%
发文量
1361
审稿时长
14 weeks
期刊介绍: Much of contemporary investigation in the life sciences is devoted to the molecular-scale understanding of the relationships between genes and the environment — in particular, dynamic alterations in the levels, modifications, and interactions of cellular effectors, including proteins. Frontiers in Molecular Biosciences offers an international publication platform for basic as well as applied research; we encourage contributions spanning both established and emerging areas of biology. To this end, the journal draws from empirical disciplines such as structural biology, enzymology, biochemistry, and biophysics, capitalizing as well on the technological advancements that have enabled metabolomics and proteomics measurements in massively parallel throughput, and the development of robust and innovative computational biology strategies. We also recognize influences from medicine and technology, welcoming studies in molecular genetics, molecular diagnostics and therapeutics, and nanotechnology. Our ultimate objective is the comprehensive illustration of the molecular mechanisms regulating proteins, nucleic acids, carbohydrates, lipids, and small metabolites in organisms across all branches of life. In addition to interesting new findings, techniques, and applications, Frontiers in Molecular Biosciences will consider new testable hypotheses to inspire different perspectives and stimulate scientific dialogue. The integration of in silico, in vitro, and in vivo approaches will benefit endeavors across all domains of the life sciences.
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