Identification of Key Genes and Pathways in Lenvatinib-resistant Hepatocellular Carcinoma using Bioinformatic Analysis and Experimental Validation.

IF 3.5 4区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Ming Yang, Zhaoyue Wang, Riga Su, Dongbing Li, Jun Zhou
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引用次数: 0

Abstract

Background: Resistance to lenvatinib poses a serious threat to the therapy of patients with Hepatocellular Carcinoma (HCC). The mechanism by which HCC develops resistance to lenvatinib is currently unknown.

Objective: The aim of this study was to identify key genes and pathways involved in lenvatinib resistance in HCC using bioinformatic analysis and experimental validation.

Methods: Differentially expressed genes (DEGs) were identified from the GSE186191 gene expression profile, comparing HCC cell lines with lenvatinib-resistant HCC cell lines. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses were then carried out using DAVID. A protein-protein interaction network was constructed to visualize DEGs and identify hub genes. The expression and prognostic significance of these hub genes were further examined. Additionally, genomic enrichment analysis (GSEA) was utilized to investigate the potential functions of key genes. Following this, the presence of AHSG was validated in both the original Huh7 cells and the lenvatinib-resistant Huh7 (Huh7LR) cells resistant to lenvatinib through the utilization of quantitative real-time PCR (qRT-PCR).

Results: A total of 232 DEGs were identified between HCC cell lines and those that are resistant to lenvatinib. These DEGs were significantly associated with arrhythmogenic right ventricular cardiomyopathy, hypertrophic cardiomyopathy, dilated cardiomyopathy, and mucin-type O-glycan biosynthesis. Three hub genes, including AHSG, C6, and ORM1, were identified. The low expression of AHSG showed a poorer prognosis in HCC. GSEA demonstrated a significant correlation between low AHSG expression and pathways involving fatty acid metabolism, ribosome function, glycine, serine, and threonine metabolism, peroxisome activity, and bile acid biosynthesis. The expression of AHSG was notably reduced in Huh7LR cells (p = 0.006) compared to Huh7 cells.

Conclusion: Diminished AHSG expression is strongly associated with lenvatinib resistance in HCC, suggesting that it may have implications for developing effective strategies to overcome this resistance.

利用生物信息学分析和实验验证鉴定lenvatinib耐药肝细胞癌的关键基因和通路。
背景:lenvatinib耐药严重威胁肝细胞癌(HCC)患者的治疗。HCC对lenvatinib产生耐药性的机制目前尚不清楚。目的:本研究的目的是通过生物信息学分析和实验验证,确定HCC中lenvatinib耐药的关键基因和途径。方法:从GSE186191基因表达谱中鉴定差异表达基因(DEGs),并将HCC细胞系与lenvatinib耐药HCC细胞系进行比较。然后使用DAVID对基因本体和京都基因与基因组百科全书进行分析。构建蛋白相互作用网络,实现DEGs可视化和枢纽基因识别。进一步研究这些中心基因的表达及其预后意义。此外,利用基因组富集分析(GSEA)来研究关键基因的潜在功能。随后,利用实时荧光定量PCR (qRT-PCR)技术,在原始Huh7细胞和对lenvatinib耐药的Huh7 (Huh7LR)细胞中验证了AHSG的存在。结果:在HCC细胞系和lenvatinib耐药细胞系之间共鉴定出232个deg。这些deg与致心律失常性右室心肌病、肥厚性心肌病、扩张性心肌病和粘蛋白型o -聚糖生物合成显著相关。鉴定出三个枢纽基因,包括AHSG、C6和ORM1。AHSG低表达在HCC中预后较差。GSEA表明,低AHSG表达与脂肪酸代谢、核糖体功能、甘氨酸、丝氨酸和苏氨酸代谢、过氧化物酶体活性和胆汁酸生物合成等途径之间存在显著相关性。AHSG在Huh7LR细胞中的表达明显低于Huh7细胞(p = 0.006)。结论:AHSG表达减少与HCC中lenvatinib耐药密切相关,提示这可能对开发克服这种耐药的有效策略具有重要意义。
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来源期刊
Current medicinal chemistry
Current medicinal chemistry 医学-生化与分子生物学
CiteScore
8.60
自引率
2.40%
发文量
468
审稿时长
3 months
期刊介绍: Aims & Scope Current Medicinal Chemistry covers all the latest and outstanding developments in medicinal chemistry and rational drug design. Each issue contains a series of timely in-depth reviews and guest edited thematic issues written by leaders in the field covering a range of the current topics in medicinal chemistry. The journal also publishes reviews on recent patents. Current Medicinal Chemistry is an essential journal for every medicinal chemist who wishes to be kept informed and up-to-date with the latest and most important developments.
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