On-the-fly resolution enhancement in X-ray protein crystallography using electric field.

IF 2.2 4区 生物学 Q3 BIOPHYSICS
Krishna Prasad Khakurel, Michal Nemergut, Purbaj Pant, Martin Savko, Jakob Andreasson, Gabriel Žoldák
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引用次数: 0

Abstract

X-ray crystallography has tremendously served structural biology by routinely providing high-resolution 3D structures of macromolecules. The extent of information encoded in the X-ray crystallography is proportional to which resolution the crystals diffract and the structure can be refined to. Therefore, there is a continuous effort to obtain high-quality crystals, especially for those proteins, which are considered difficult to crystallize into high-quality protein crystals of suitable sizes for X-ray crystallography. Efforts in enhancing the resolution in X-ray crystallography have also been made by optimizing crystallization protocols using external stimuli such as an electric field and magnetic field during the crystallization. Here, we present the feasibility of on-the-fly post-crystallization resolution enhancement of the protein crystal diffraction by applying a high-voltage electric field. The electric field between 2 and 11 kV/cm, which was applied after mounting the crystals in the beamline, resulted in the enhancement of the resolution. The crystal diffraction quality improved progressively with the exposure time. Moreover, we also find that upto defined electric field threshold, the protein structure remains largely unperturbed, a conclusion further supported by molecular dynamics simulations.

利用电场增强x射线蛋白质晶体学的动态分辨率。
x射线晶体学通过提供大分子的高分辨率3D结构,极大地服务于结构生物学。在x射线晶体学中编码的信息的程度与晶体衍射的分辨率和结构可以细化成正比。因此,人们一直在努力获得高质量的晶体,特别是那些被认为难以结晶成适合x射线晶体学尺寸的高质量蛋白质晶体的蛋白质。通过在结晶过程中使用电场和磁场等外部刺激优化结晶方案,努力提高x射线晶体学的分辨率。在这里,我们提出了通过施加高压电场来提高蛋白质晶体衍射的动态结晶后分辨率的可行性。在光束线上安装晶体后,施加2 ~ 11 kV/cm的电场,导致分辨率提高。随着曝光时间的延长,晶体衍射质量逐渐提高。此外,我们还发现,在给定的电场阈值范围内,蛋白质结构基本保持不变,这一结论得到了分子动力学模拟的进一步支持。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
European Biophysics Journal
European Biophysics Journal 生物-生物物理
CiteScore
4.30
自引率
0.00%
发文量
43
审稿时长
6-12 weeks
期刊介绍: The journal publishes papers in the field of biophysics, which is defined as the study of biological phenomena by using physical methods and concepts. Original papers, reviews and Biophysics letters are published. The primary goal of this journal is to advance the understanding of biological structure and function by application of the principles of physical science, and by presenting the work in a biophysical context. Papers employing a distinctively biophysical approach at all levels of biological organisation will be considered, as will both experimental and theoretical studies. The criteria for acceptance are scientific content, originality and relevance to biological systems of current interest and importance. Principal areas of interest include: - Structure and dynamics of biological macromolecules - Membrane biophysics and ion channels - Cell biophysics and organisation - Macromolecular assemblies - Biophysical methods and instrumentation - Advanced microscopics - System dynamics.
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