Random walk models in the life sciences: including births, deaths and local interactions.

IF 3.7 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Journal of The Royal Society Interface Pub Date : 2025-01-01 Epub Date: 2025-01-15 DOI:10.1098/rsif.2024.0422
Michael J Plank, Matthew J Simpson, Ruth E Baker
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引用次数: 0

Abstract

Random walks and related spatial stochastic models have been used in a range of application areas, including animal and plant ecology, infectious disease epidemiology, developmental biology, wound healing and oncology. Classical random walk models assume that all individuals in a population behave independently, ignoring local physical and biological interactions. This assumption simplifies the mathematical description of the population considerably, enabling continuum-limit descriptions to be derived and used in model analysis and fitting. However, interactions between individuals can have a crucial impact on population-level behaviour. In recent decades, research has increasingly been directed towards models that include interactions, including physical crowding effects and local biological processes such as adhesion, competition, dispersal, predation and adaptive directional bias. In this article, we review the progress that has been made with models of interacting individuals. We aim to provide an overview that is accessible to researchers in application areas, as well as to specialist modellers. We focus particularly on derivation of asymptotically exact or approximate continuum-limit descriptions and simplified deterministic models of mean-field behaviour and resulting spatial patterns. We provide worked examples and illustrative results of selected models. We conclude with a discussion of current areas of focus and future challenges.

生命科学中的随机漫步模型:包括出生、死亡和局部相互作用。
随机漫步及其相关的空间随机模型已被广泛应用于动植物生态学、传染病流行病学、发育生物学、伤口愈合和肿瘤学等领域。经典的随机漫步模型假设种群中的所有个体行为独立,忽略了局部的物理和生物相互作用。这一假设大大简化了总体的数学描述,使连续极限描述得以导出并用于模型分析和拟合。然而,个体之间的相互作用可能对种群水平的行为产生至关重要的影响。近几十年来,研究越来越多地指向包括相互作用的模型,包括物理拥挤效应和局部生物过程,如粘附、竞争、分散、捕食和适应性方向偏差。在本文中,我们回顾了在相互作用个体模型方面取得的进展。我们的目标是提供一个概述,是可访问的研究人员在应用领域,以及专业建模。我们特别关注渐近精确或近似连续极限描述的推导和简化的确定性模型的平均场行为和由此产生的空间模式。给出了所选模型的算例和说明结果。最后,我们将讨论当前的重点领域和未来的挑战。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of The Royal Society Interface
Journal of The Royal Society Interface 综合性期刊-综合性期刊
CiteScore
7.10
自引率
2.60%
发文量
234
审稿时长
2.5 months
期刊介绍: J. R. Soc. Interface welcomes articles of high quality research at the interface of the physical and life sciences. It provides a high-quality forum to publish rapidly and interact across this boundary in two main ways: J. R. Soc. Interface publishes research applying chemistry, engineering, materials science, mathematics and physics to the biological and medical sciences; it also highlights discoveries in the life sciences of relevance to the physical sciences. Both sides of the interface are considered equally and it is one of the only journals to cover this exciting new territory. J. R. Soc. Interface welcomes contributions on a diverse range of topics, including but not limited to; biocomplexity, bioengineering, bioinformatics, biomaterials, biomechanics, bionanoscience, biophysics, chemical biology, computer science (as applied to the life sciences), medical physics, synthetic biology, systems biology, theoretical biology and tissue engineering.
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