{"title":"Directed Electrostatics Strategy Integrated as a Graph Neural Network Approach for Accelerated Cluster Structure Prediction.","authors":"Sridatri Nandy, K V Jovan Jose","doi":"10.1021/acs.jctc.4c01257","DOIUrl":null,"url":null,"abstract":"<p><p>We present a directed electrostatics strategy integrated as a graph neural network (DESIGNN) approach for predicting stable nanocluster structures on their potential energy surfaces (PESs). The DESIGNN approach is a graph neural network (GNN)-based model for building structures of large atomic clusters with specific sizes and point-group symmetry. This model assists in the structure building of atomic metal clusters by predicting molecular electrostatic potential (MESP) topography minima on their structural evolution paths. The DESIGNN approach is benchmarked on the prototype Mg<sub><i>n</i></sub> clusters with <i>n</i> < 150. The predicted MESP topography minima of Mg<sub><i>n</i></sub> clusters, <i>n</i> < 70, fairly agrees with the whole-molecule MESP topography calculations. Moreover, the ground-state structures of Mg<sub><i>n</i></sub> (<i>n</i> = 4-32) clusters generated through the DESIGNN approach corroborate well with the global minimum structures reported in the literature. Furthermore, this approach could generate novel symmetric isomers of medium to large Mg<sub><i>n</i></sub> clusters in the size regime, <i>n</i> < 150, by constraining the point-group symmetry of the parent clusters. The parent growth potential (GP) of a cluster gives a measure of its parent cluster to accommodate more atoms and characterize the structures on the DESIGNN-guided path. The GP of a cluster can also be interpreted as a measure of the cooperative interaction relative to its parent cluster. Along the highest GP paths, the DESIGNN approach is further employed to generate stable Mg<sub><i>n</i></sub> nanoclusters with <i>n</i> = 228, 236, 257, 260. Therefore, the DESIGNN approach holds great promise in accelerating the structure search and prediction of large metal clusters guided through MESP topography.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":""},"PeriodicalIF":5.7000,"publicationDate":"2025-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.4c01257","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
We present a directed electrostatics strategy integrated as a graph neural network (DESIGNN) approach for predicting stable nanocluster structures on their potential energy surfaces (PESs). The DESIGNN approach is a graph neural network (GNN)-based model for building structures of large atomic clusters with specific sizes and point-group symmetry. This model assists in the structure building of atomic metal clusters by predicting molecular electrostatic potential (MESP) topography minima on their structural evolution paths. The DESIGNN approach is benchmarked on the prototype Mgn clusters with n < 150. The predicted MESP topography minima of Mgn clusters, n < 70, fairly agrees with the whole-molecule MESP topography calculations. Moreover, the ground-state structures of Mgn (n = 4-32) clusters generated through the DESIGNN approach corroborate well with the global minimum structures reported in the literature. Furthermore, this approach could generate novel symmetric isomers of medium to large Mgn clusters in the size regime, n < 150, by constraining the point-group symmetry of the parent clusters. The parent growth potential (GP) of a cluster gives a measure of its parent cluster to accommodate more atoms and characterize the structures on the DESIGNN-guided path. The GP of a cluster can also be interpreted as a measure of the cooperative interaction relative to its parent cluster. Along the highest GP paths, the DESIGNN approach is further employed to generate stable Mgn nanoclusters with n = 228, 236, 257, 260. Therefore, the DESIGNN approach holds great promise in accelerating the structure search and prediction of large metal clusters guided through MESP topography.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.