Study on identification of diagnostic biomarkers in serum for papillary thyroid cancer in different iodine nutrition regions.

IF 2 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Zhiyong Liu, Wei Zhang, Chenguang Wang, Xuebin Wang, Jie Luo, Yan He, Yashu Zhang, Shiqi Chen, Qi Zhou, Dianjun Sun, Lijun Fan
{"title":"Study on identification of diagnostic biomarkers in serum for papillary thyroid cancer in different iodine nutrition regions.","authors":"Zhiyong Liu, Wei Zhang, Chenguang Wang, Xuebin Wang, Jie Luo, Yan He, Yashu Zhang, Shiqi Chen, Qi Zhou, Dianjun Sun, Lijun Fan","doi":"10.1080/1354750X.2024.2445258","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>At present, there is a lack of efficient biomarkers for the diagnosis of thyroid cancer, and the influence of natural factors such as high iodine exposure on the expression of biomarkers remains unclear.</p><p><strong>Methods: </strong>Serum samples from papillary thyroid cancer (PTC) and non-cancer controls matched 1:1 in different iodine nutritional regions were analyzed metabolomically using an ultra-high performance liquid chromatography-Orbitrap Exploris mass spectrometry (UHPLC-OE-MS) platform. Then the data were randomly divided into training and test sets in a 1:1 ratio according to the different iodine nutritional regions and different PTC status. In the training set, differential metabolites were selected by multivariate statistical analysis methods, and the prediction models were then built using Random forest (RF), Gradient boosting machine (GBM), and Support vector machine (SVM) models. At last, their diagnostic effects were examined in the test set.</p><p><strong>Results: </strong>PTCs were significantly separated from non-cancer samples, and a total of 37 differentially expressed metabolites were selected. The results of pathway analysis showed that the PTC-related differential metabolites were mainly involved in the sphingolipid metabolism and glycerophosphate metabolism. The prediction models constructed by the 6 screened potential biomarkers could all better identify PTCs in the test set. The metabolomic fingerprinting between PTC and non-cancer groups in different water iodine regions did not show significant disturbance. However, high iodine exposure would effect on the expression of six metabolites, reflecting in a significantly different diagnostic efficacy in different water iodine regions.</p><p><strong>Conclusion: </strong>Serum metabolites have potential value as biomarkers of PTC, and iodine status affects the expression and even diagnostic levels of certain serum metabolites.</p>","PeriodicalId":8921,"journal":{"name":"Biomarkers","volume":" ","pages":"1-10"},"PeriodicalIF":2.0000,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biomarkers","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1080/1354750X.2024.2445258","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Background: At present, there is a lack of efficient biomarkers for the diagnosis of thyroid cancer, and the influence of natural factors such as high iodine exposure on the expression of biomarkers remains unclear.

Methods: Serum samples from papillary thyroid cancer (PTC) and non-cancer controls matched 1:1 in different iodine nutritional regions were analyzed metabolomically using an ultra-high performance liquid chromatography-Orbitrap Exploris mass spectrometry (UHPLC-OE-MS) platform. Then the data were randomly divided into training and test sets in a 1:1 ratio according to the different iodine nutritional regions and different PTC status. In the training set, differential metabolites were selected by multivariate statistical analysis methods, and the prediction models were then built using Random forest (RF), Gradient boosting machine (GBM), and Support vector machine (SVM) models. At last, their diagnostic effects were examined in the test set.

Results: PTCs were significantly separated from non-cancer samples, and a total of 37 differentially expressed metabolites were selected. The results of pathway analysis showed that the PTC-related differential metabolites were mainly involved in the sphingolipid metabolism and glycerophosphate metabolism. The prediction models constructed by the 6 screened potential biomarkers could all better identify PTCs in the test set. The metabolomic fingerprinting between PTC and non-cancer groups in different water iodine regions did not show significant disturbance. However, high iodine exposure would effect on the expression of six metabolites, reflecting in a significantly different diagnostic efficacy in different water iodine regions.

Conclusion: Serum metabolites have potential value as biomarkers of PTC, and iodine status affects the expression and even diagnostic levels of certain serum metabolites.

不同碘营养区甲状腺乳头状癌血清诊断标志物鉴定的研究。
目前,缺乏有效的甲状腺癌诊断生物标志物,高碘暴露等自然因素对生物标志物表达的影响尚不清楚。方法采用超高效液相色谱-超高效液相色谱-质谱联用技术(UHPLC-OE-MS)对甲状腺乳头状癌(PTC)和非癌对照血清中碘营养区比例为1:1的碘营养区进行代谢分析。然后根据不同的碘营养区域和不同的PTC状态,将数据按1:1的比例随机分为训练集和测试集。在训练集中,通过多元统计分析方法选择差异代谢物,然后使用随机森林(Random forest, RF)、梯度增强机(Gradient boosting machine, GBM)和支持向量机(Support vector machine, SVM)模型建立预测模型。最后在测试集中对其诊断效果进行了检验。结果从非癌样品中分离出明显的sptc,共筛选出37个差异表达代谢物。通路分析结果显示ptc相关差异代谢物主要参与鞘脂代谢和甘油磷酸盐代谢。筛选到的6种潜在生物标志物构建的预测模型均能较好地识别测试集中的ptc。不同水碘区PTC组和非癌组之间的代谢组学指纹图谱没有显示出明显的干扰。然而,高碘暴露会影响6种代谢物的表达,这反映出在不同的水碘区诊断效果有显著差异。结论血清代谢物作为PTC的生物标志物具有潜在价值,碘水平影响某些血清代谢物的表达甚至诊断水平。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Biomarkers
Biomarkers 医学-毒理学
CiteScore
5.00
自引率
3.80%
发文量
140
审稿时长
3 months
期刊介绍: The journal Biomarkers brings together all aspects of the rapidly growing field of biomarker research, encompassing their various uses and applications in one essential source. Biomarkers provides a vital forum for the exchange of ideas and concepts in all areas of biomarker research. High quality papers in four main areas are accepted and manuscripts describing novel biomarkers and their subsequent validation are especially encouraged: • Biomarkers of disease • Biomarkers of exposure • Biomarkers of response • Biomarkers of susceptibility Manuscripts can describe biomarkers measured in humans or other animals in vivo or in vitro. Biomarkers will consider publishing negative data from studies of biomarkers of susceptibility in human populations.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信