Bo Wang, Jun Wei, Le Zhang, Hui Jiang, Cheng Jin, Shaowen Huang
{"title":"Soft sensor modeling method for Pichia pastoris fermentation process based on substructure domain transfer learning.","authors":"Bo Wang, Jun Wei, Le Zhang, Hui Jiang, Cheng Jin, Shaowen Huang","doi":"10.1186/s12896-024-00928-4","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Aiming at the problem that traditional transfer methods are prone to lose data information in the overall domain-level transfer, and it is difficult to achieve the perfect match between source and target domains, thus reducing the accuracy of the soft sensor model.</p><p><strong>Methods: </strong>This paper proposes a soft sensor modeling method based on the transfer modeling framework of substructure domain. Firstly, the Gaussian mixture model clustering algorithm is used to extract local information, cluster the source and target domains into multiple substructure domains, and adaptively weight the substructure domains according to the distances between the sub-source domains and sub-target domains. Secondly, the optimal subspace domain adaptation method integrating multiple metrics is used to obtain the optimal projection matrices <math><msub><mi>W</mi> <mi>s</mi></msub> </math> and <math><msub><mi>W</mi> <mi>t</mi></msub> </math> that are coupled with each other, and the data of source and target domains are projected to the corresponding subspace to perform spatial alignment, so as to reduce the discrepancy between the sample data of different working conditions. Finally, based on the source and target domain data after substructure domain adaptation, the least squares support vector machine algorithm is used to establish the prediction model.</p><p><strong>Results: </strong>Taking Pichia pastoris fermentation to produce inulinase as an example, the simulation results verify that the root mean square error of the proposed soft sensor model in predicting Pichia pastoris concentration and inulinase concentration is reduced by 48.7% and 54.9%, respectively.</p><p><strong>Conclusion: </strong>The proposed soft sensor modeling method can accurately predict Pichia pastoris concentration and inulinase concentration online under different working conditions, and has higher prediction accuracy than the traditional soft sensor modeling method.</p>","PeriodicalId":8905,"journal":{"name":"BMC Biotechnology","volume":"24 1","pages":"104"},"PeriodicalIF":3.5000,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11653563/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"BMC Biotechnology","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1186/s12896-024-00928-4","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Background: Aiming at the problem that traditional transfer methods are prone to lose data information in the overall domain-level transfer, and it is difficult to achieve the perfect match between source and target domains, thus reducing the accuracy of the soft sensor model.
Methods: This paper proposes a soft sensor modeling method based on the transfer modeling framework of substructure domain. Firstly, the Gaussian mixture model clustering algorithm is used to extract local information, cluster the source and target domains into multiple substructure domains, and adaptively weight the substructure domains according to the distances between the sub-source domains and sub-target domains. Secondly, the optimal subspace domain adaptation method integrating multiple metrics is used to obtain the optimal projection matrices and that are coupled with each other, and the data of source and target domains are projected to the corresponding subspace to perform spatial alignment, so as to reduce the discrepancy between the sample data of different working conditions. Finally, based on the source and target domain data after substructure domain adaptation, the least squares support vector machine algorithm is used to establish the prediction model.
Results: Taking Pichia pastoris fermentation to produce inulinase as an example, the simulation results verify that the root mean square error of the proposed soft sensor model in predicting Pichia pastoris concentration and inulinase concentration is reduced by 48.7% and 54.9%, respectively.
Conclusion: The proposed soft sensor modeling method can accurately predict Pichia pastoris concentration and inulinase concentration online under different working conditions, and has higher prediction accuracy than the traditional soft sensor modeling method.
期刊介绍:
BMC Biotechnology is an open access, peer-reviewed journal that considers articles on the manipulation of biological macromolecules or organisms for use in experimental procedures, cellular and tissue engineering or in the pharmaceutical, agricultural biotechnology and allied industries.