{"title":"Interaction of complex particles: A framework for the rapid and accurate approximation of pair potentials using neural networks.","authors":"Gusten Isfeldt, Fredrik Lundell, Jakob Wohlert","doi":"10.1103/PhysRevE.110.055305","DOIUrl":null,"url":null,"abstract":"<p><p>Motivated by the limitations of conventional coarse-grained molecular dynamics for simulation of large systems of nanoparticles and the challenges in efficiently representing general pair potentials for rigid bodies, we present a method for approximating general rigid body pair potentials based on a specialized type of deep neural network that maintains essential properties, such as conservation of energy and invariance to the chosen origins of the particles. The network uses a specialized geometric abstraction layer to convert the relative coordinates of the rigid bodies to input more suitable to a conventional artificial neural network, which is trained together with the specialized layer. This results in geometric representations of the particles optimized for the specific potential. The network can be trained directly on scalar values to fit a model without explicit gradient and then used to efficiently evaluate the force and torque on the particles resulting from the potential. The concept is demonstrated with an atomistic interaction model for carbon nanotubes and the resulting model is compared with a common type of coarse-grained model optimized for the same potential, with even very small networks comparing favourably and larger networks achieving up to two orders of magnitude lower cost. The sensitivity to noise in the training data is investigated and the model is found to strongly reject noise up to 12.5% given a dataset of 10^{7} samples. The performance of a proof-of-concept implementation is demonstrated on a variety of hardware, showing the models viability for large-scale simulations. Furthermore, generalization to soft bodies and potentials for polydisperse systems are discussed.</p>","PeriodicalId":20085,"journal":{"name":"Physical review. E","volume":"110 5-2","pages":"055305"},"PeriodicalIF":2.4000,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Physical review. E","FirstCategoryId":"101","ListUrlMain":"https://doi.org/10.1103/PhysRevE.110.055305","RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Mathematics","Score":null,"Total":0}
引用次数: 0
Abstract
Motivated by the limitations of conventional coarse-grained molecular dynamics for simulation of large systems of nanoparticles and the challenges in efficiently representing general pair potentials for rigid bodies, we present a method for approximating general rigid body pair potentials based on a specialized type of deep neural network that maintains essential properties, such as conservation of energy and invariance to the chosen origins of the particles. The network uses a specialized geometric abstraction layer to convert the relative coordinates of the rigid bodies to input more suitable to a conventional artificial neural network, which is trained together with the specialized layer. This results in geometric representations of the particles optimized for the specific potential. The network can be trained directly on scalar values to fit a model without explicit gradient and then used to efficiently evaluate the force and torque on the particles resulting from the potential. The concept is demonstrated with an atomistic interaction model for carbon nanotubes and the resulting model is compared with a common type of coarse-grained model optimized for the same potential, with even very small networks comparing favourably and larger networks achieving up to two orders of magnitude lower cost. The sensitivity to noise in the training data is investigated and the model is found to strongly reject noise up to 12.5% given a dataset of 10^{7} samples. The performance of a proof-of-concept implementation is demonstrated on a variety of hardware, showing the models viability for large-scale simulations. Furthermore, generalization to soft bodies and potentials for polydisperse systems are discussed.
期刊介绍:
Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.