Interaction of complex particles: A framework for the rapid and accurate approximation of pair potentials using neural networks.

IF 2.4 3区 物理与天体物理 Q1 Mathematics
Gusten Isfeldt, Fredrik Lundell, Jakob Wohlert
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引用次数: 0

Abstract

Motivated by the limitations of conventional coarse-grained molecular dynamics for simulation of large systems of nanoparticles and the challenges in efficiently representing general pair potentials for rigid bodies, we present a method for approximating general rigid body pair potentials based on a specialized type of deep neural network that maintains essential properties, such as conservation of energy and invariance to the chosen origins of the particles. The network uses a specialized geometric abstraction layer to convert the relative coordinates of the rigid bodies to input more suitable to a conventional artificial neural network, which is trained together with the specialized layer. This results in geometric representations of the particles optimized for the specific potential. The network can be trained directly on scalar values to fit a model without explicit gradient and then used to efficiently evaluate the force and torque on the particles resulting from the potential. The concept is demonstrated with an atomistic interaction model for carbon nanotubes and the resulting model is compared with a common type of coarse-grained model optimized for the same potential, with even very small networks comparing favourably and larger networks achieving up to two orders of magnitude lower cost. The sensitivity to noise in the training data is investigated and the model is found to strongly reject noise up to 12.5% given a dataset of 10^{7} samples. The performance of a proof-of-concept implementation is demonstrated on a variety of hardware, showing the models viability for large-scale simulations. Furthermore, generalization to soft bodies and potentials for polydisperse systems are discussed.

复杂粒子的相互作用:利用神经网络快速准确地逼近对势的框架。
传统的粗粒度分子动力学在模拟大型纳米粒子系统方面存在局限性,而且在有效表示刚体的一般配对位势方面也面临挑战。受此启发,我们提出了一种基于专门类型深度神经网络的近似一般刚体配对位势的方法,该方法保持了能量守恒和对所选粒子起源的不变性等基本特性。该网络使用专门的几何抽象层将刚体的相对坐标转换为更适合传统人工神经网络的输入,而传统人工神经网络则与专门的几何抽象层一起进行训练。这就产生了针对特定潜能进行优化的粒子几何表示。该网络可以直接根据标量值进行训练,以拟合一个没有明确梯度的模型,然后用于有效评估电势对粒子产生的力和扭矩。我们用碳纳米管的原子相互作用模型对这一概念进行了演示,并将生成的模型与针对相同电势进行优化的常见粗粒度模型进行了比较,结果表明,即使是非常小的网络也能取得良好的效果,而较大的网络则能降低成本达两个数量级。对训练数据中噪声的敏感性进行了研究,发现在 10^{7} 样本的数据集上,该模型对高达 12.5% 的噪声具有很强的剔除能力。在各种硬件上演示了概念验证实施的性能,显示了模型在大规模模拟中的可行性。此外,还讨论了对软体的推广以及多分散系统的潜力。
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来源期刊
Physical review. E
Physical review. E 物理-物理:流体与等离子体
CiteScore
4.60
自引率
16.70%
发文量
0
审稿时长
3.3 months
期刊介绍: Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.
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