Complete genome sequence of Corynebacterium sp. SCR221107, encoding biosynthesis of vitamin B₁₂ isolated from the rumen fluid of Holstein dairy cows.

IF 2.7 3区农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE

Journal of Animal Science and Technology Pub Date : 2024-11-01 Epub Date: 2024-11-30 DOI:10.5187/jast.2024.e74

Keun Sik Baik, Sonny C Ramos, Sang Hoon Na, Seon Ho Kim, A Rang Son, Michelle Miguel, Sang Suk Lee

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Abstract

Corynebacterium sp. SCR221107 was isolated from the rumen fluid of healthy male Holstein dairy cows from a research farm at Suncheon, Jeollanam-do, Korea. Corynebacterium sp. SCR221107 is a functional probiotic candidate that produces vitamin B₁₂. All Corynebacterium sp. SCR221107 was sequenced using the PacBio RS II and Illumina HiSeq platforms and assembled de novo. The complete genome sequence of Corynebacterium sp. SCR221107 contained one circular chromosome (3,043,024 bp) with a guanine + cytosine (GC) content of 60.1%. Annotation analysis showed the presence of 2,639 protein-coding sequences, 15 rRNA genes, and 57 tRNA genes. Genome analysis found that Corynebacterium sp. SCR221107 encodes various genes associated with vitamin B12 synthesis and transport. The genomic information provided a detailed understanding of Corynebacterium sp. SCR221107, suggesting that this isolate may have potential probiotic applications.

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从荷斯坦奶牛瘤胃液中分离的编码维生素B12生物合成的棒状杆菌SCR221107的全基因组序列。

杆状杆菌sp. SCR221107从韩国全罗南道顺天某研究农场的健康雄性荷斯坦奶牛瘤胃液中分离得到。棒状杆菌sp. SCR221107是一种产生维生素B12的功能性候选益生菌。使用PacBio RS II和Illumina HiSeq平台对所有棒状杆菌sp. SCR221107进行测序，并重新组装。棒状杆菌sc221107全基因组序列包含1条环状染色体（3043024 bp），鸟嘌呤+胞嘧啶（GC）含量为60.1%。注释分析显示存在2639个蛋白质编码序列，15个rRNA基因和57个tRNA基因。基因组分析发现棒状杆菌sp. SCR221107编码多种与维生素B12合成和运输相关的基因。基因组信息提供了对棒状杆菌sp. SCR221107的详细了解，表明该分离物可能具有潜在的益生菌应用价值。

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来源期刊

Journal of Animal Science and Technology Agricultural and Biological Sciences-Food Science

CiteScore

4.50

自引率

8.70%

发文量

审稿时长

7 weeks

期刊介绍： Journal of Animal Science and Technology (J. Anim. Sci. Technol. or JAST) is a peer-reviewed, open access journal publishing original research, review articles and notes in all fields of animal science. Topics covered by the journal include: genetics and breeding, physiology, nutrition of monogastric animals, nutrition of ruminants, animal products (milk, meat, eggs and their by-products) and their processing, grasslands and roughages, livestock environment, animal biotechnology, animal behavior and welfare. Articles generally report research involving beef cattle, dairy cattle, pigs, companion animals, goats, horses, and sheep. However, studies involving other farm animals, aquatic and wildlife species, and laboratory animal species that address fundamental questions related to livestock and companion animal biology will also be considered for publication. The Journal of Animal Science and Technology (J. Anim. Technol. or JAST) has been the official journal of The Korean Society of Animal Science and Technology (KSAST) since 2000, formerly known as The Korean Journal of Animal Sciences (launched in 1956).