Data Governance and Distribution of Biobank: A Case from a Chinese Cancer Hospital.

IF 1.6 4区 生物学
Jingjing Shi, Yan Guo, Na He, Wenbin Xia, Hongkun Liu, Haixin Li
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引用次数: 0

Abstract

Objectives: To facilitate the regionalization, specialization, and digitization of biobanks, three issues regarding data collection and application must be addressed (1) integration and distribution of data governance, (2) efficiency and efficacy of data governance, and (3) sustainability of data governance. Methods: We collaborated with stakeholders to identify priorities and assess infrastructure needs through the continuous evaluation and analysis of projects. We developed data management solutions, catalogs, and data models to optimize and support data collection, distribution, and application. Furthermore, ontologies were used to facilitate data integration from multiple sources, and Minimum Information About BIobank Data Sharing (MIABIS) was defined as accessible to all patients. To enhance data integrity, we conducted retrospective and prospective follow-up studies. Results: We completed infrastructure upgrades to match technical solutions and research demands. An information management software with six primary functional divisions was developed for data governance. We optimized the database structure and changed the biospecimen accumulation model from biospecimen-based to patient-centered and service-oriented. Subsequently, we specified 85 attributes of MIABIS to describe the biobank contents. A dual-pillar approach was adopted to expand the biobank's data in collaboration with other institutions, and MIABIS served as a bridge for both vertical and horizontal networks. From 2003 to 2021, we collected a total of 156,997 patient biospecimens/data from 20 cancer types, matching 53,113 cases from follow-up surveys. In addition, we supplied more than 40,000 biospecimens/data points for above 300 scientific research projects. Conclusions: An appropriate information platform for a biobank is fundamental to data collection, distribution, and application, particularly in the context of data-intensive research. We implemented a standardized scientific data structure to fulfill the research requirements. The sustainable development of a biobank depends on a scientific, standardized, and service-oriented data governance approach, along with the efficient utilization of emerging technologies.

生物样本库的数据治理与分布:以某肿瘤医院为例。
目标:促进生物库区域化、专业化和数字化,必须解决数据收集和应用中的三个问题:(1)数据治理的整合和分布;(2)数据治理的效率和功效;(3)数据治理的可持续性。方法:我们与利益相关者合作,通过对项目的持续评估和分析,确定优先事项并评估基础设施需求。我们开发了数据管理解决方案、目录和数据模型,以优化和支持数据收集、分发和应用。此外,本体论用于促进来自多个来源的数据集成,并将生物银行数据共享的最小信息(MIABIS)定义为所有患者都可以访问。为了提高数据的完整性,我们进行了回顾性和前瞻性随访研究。结果:我们完成了基础设施升级,以匹配技术解决方案和研究需求。针对数据治理,开发了具有六个主要功能部门的信息管理软件。优化数据库结构,将生物标本积累模式从“以生物标本为基础”转变为“以患者为中心、以服务为导向”。随后,我们指定了85个MIABIS属性来描述生物库内容。采用双支柱方法与其他机构合作扩大生物库的数据,而MIABIS则作为垂直和水平网络的桥梁。从2003年到2021年,我们共收集了来自20种癌症类型的156997例患者生物标本/数据,与随访调查的53113例病例相匹配。此外,我们还为300多个科研项目提供了4万多个生物标本/数据点。结论:一个合适的生物库信息平台是数据收集、分发和应用的基础,特别是在数据密集型研究的背景下。实施规范的科学数据结构,满足科研需求。生物库的可持续发展有赖于科学、规范、服务型的数据治理方法,以及新兴技术的高效利用。
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来源期刊
Biopreservation and Biobanking
Biopreservation and Biobanking Biochemistry, Genetics and Molecular Biology-General Biochemistry,Genetics and Molecular Biology
自引率
12.50%
发文量
114
期刊介绍: Biopreservation and Biobanking is the first journal to provide a unifying forum for the peer-reviewed communication of recent advances in the emerging and evolving field of biospecimen procurement, processing, preservation and banking, distribution, and use. The Journal publishes a range of original articles focusing on current challenges and problems in biopreservation, and advances in methods to address these issues related to the processing of macromolecules, cells, and tissues for research. In a new section dedicated to Emerging Markets and Technologies, the Journal highlights the emergence of new markets and technologies that are either adopting or disrupting the biobank framework as they imprint on society. The solutions presented here are anticipated to help drive innovation within the biobank community. Biopreservation and Biobanking also explores the ethical, legal, and societal considerations surrounding biobanking and biorepository operation. Ideas and practical solutions relevant to improved quality, efficiency, and sustainability of repositories, and relating to their management, operation and oversight are discussed as well.
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