"Genome Assembly Of The Winter Ant, Prenolepis Imparis".

IF 3 2区 生物学 Q2 EVOLUTIONARY BIOLOGY
Elizabeth I Cash, Philip S Ward, Merly Escalona, Ruta Sahasrabudhe, Courtney Miller, Erin Toffelmier, Colin Fairbairn, William Seligmann, H Bradley Shaffer, Neil D Tsutsui
{"title":"\"Genome Assembly Of The Winter Ant, Prenolepis Imparis\".","authors":"Elizabeth I Cash, Philip S Ward, Merly Escalona, Ruta Sahasrabudhe, Courtney Miller, Erin Toffelmier, Colin Fairbairn, William Seligmann, H Bradley Shaffer, Neil D Tsutsui","doi":"10.1093/jhered/esae066","DOIUrl":null,"url":null,"abstract":"<p><p>The winter ant, Prenolepis imparis, is one of the most common, widespread, and conspicuous ant species in North America. P. imparis is well adapted to cold climates, and consequently, is often noted as the only active ant species during colder months. This specialized life history makes P. imparis a useful model organism for exploring thermal physiology and understanding the potential impacts of a warming climate on insects. Phylogeographic studies have revealed deeply divergent lineages across North America, as well as a single collection of an apparent social parasite in California. In light of its distinctive cold adaptation and recently discovered geographic diversity, a better understanding of the underlying genetic patterns of the winter ant is valuable to future conservation efforts for this species. Here, we present a high-quality genome assembly of P. imparis from Santa Clara County, California. This genome assembly consists of 787 scaffolds spanning 327.3 Mb, with contig N50 of 901.9 kb, scaffold N50 of 18.7 Mb, and BUSCO completeness of 96.5%. This genome assembly provides an essential foundation for future studies of the winter ant and will be particularly useful for understanding the genetic basis of thermal adaptation, cold resistance, chemical ecology, and the resilience of organisms in response to a changing climate.</p>","PeriodicalId":54811,"journal":{"name":"Journal of Heredity","volume":" ","pages":""},"PeriodicalIF":3.0000,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Heredity","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1093/jhered/esae066","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"EVOLUTIONARY BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

The winter ant, Prenolepis imparis, is one of the most common, widespread, and conspicuous ant species in North America. P. imparis is well adapted to cold climates, and consequently, is often noted as the only active ant species during colder months. This specialized life history makes P. imparis a useful model organism for exploring thermal physiology and understanding the potential impacts of a warming climate on insects. Phylogeographic studies have revealed deeply divergent lineages across North America, as well as a single collection of an apparent social parasite in California. In light of its distinctive cold adaptation and recently discovered geographic diversity, a better understanding of the underlying genetic patterns of the winter ant is valuable to future conservation efforts for this species. Here, we present a high-quality genome assembly of P. imparis from Santa Clara County, California. This genome assembly consists of 787 scaffolds spanning 327.3 Mb, with contig N50 of 901.9 kb, scaffold N50 of 18.7 Mb, and BUSCO completeness of 96.5%. This genome assembly provides an essential foundation for future studies of the winter ant and will be particularly useful for understanding the genetic basis of thermal adaptation, cold resistance, chemical ecology, and the resilience of organisms in response to a changing climate.

冬蚁的基因组组装,Prenolepis Imparis”。
冬蚁(Prenolepis imparis)是北美最常见、分布最广、最显眼的蚂蚁之一。羊齿蚁很好地适应了寒冷的气候,因此,经常被认为是寒冷月份唯一活跃的蚂蚁物种。这一特殊的生活史使扁扁蝶成为探索热生理和了解气候变暖对昆虫潜在影响的有用模式生物。系统地理学研究揭示了遍布北美的深度分化的谱系,以及加利福尼亚一个明显的群居寄生虫的单一集合。鉴于其独特的寒冷适应性和最近发现的地理多样性,更好地了解冬季蚂蚁的潜在遗传模式对该物种的未来保护工作很有价值。在这里,我们提出了一个高质量的基因组组装P. imparis从圣克拉拉县,加利福尼亚州。该基因组组装由787个scaffold组成,全长327.3 Mb,其中contig N50为901.9 kb, scaffold N50为18.7 Mb, BUSCO完整性为96.5%。这种基因组组合为未来冬蚁的研究提供了重要的基础,对于理解热适应、抗寒性、化学生态学和生物体对气候变化的适应能力的遗传基础尤其有用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Journal of Heredity
Journal of Heredity 生物-遗传学
CiteScore
5.20
自引率
6.50%
发文量
63
审稿时长
6-12 weeks
期刊介绍: Over the last 100 years, the Journal of Heredity has established and maintained a tradition of scholarly excellence in the publication of genetics research. Virtually every major figure in the field has contributed to the journal. Established in 1903, Journal of Heredity covers organismal genetics across a wide range of disciplines and taxa. Articles include such rapidly advancing fields as conservation genetics of endangered species, population structure and phylogeography, molecular evolution and speciation, molecular genetics of disease resistance in plants and animals, genetic biodiversity and relevant computer programs.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信