Uncovering the key lncRNAs in regulating cadmium accumulation and translocation in sweet sorghum.

IF 3.6 3区 生物学 Q1 PLANT SCIENCES
Planta Pub Date : 2024-12-11 DOI:10.1007/s00425-024-04589-7
Kangqi Lin, Ze Yi, Sulian Lv, Bo Zhang, Zijin Guo, Yinxin Li
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引用次数: 0

Abstract

Main conclusion: 1988 lncRNAs were identified in sweet sorghum roots under cadmium treatment; lncRNA 15962 and lncRNA 11558 were validated to be the key lncRNAs involved in regulating cadmium accumulation and translocation. Cadmium (Cd) has become one of the most harmful and widespread pollutants with industry development. Sweet sorghum is an ideal plant for phytoremediation of Cd-contaminated soil. However, little is known about the regulatory role of long non-coding RNAs (lncRNAs) associated with Cd stress response in sweet sorghum. Here, lncRNA-seq was carried out in the roots of two contrasting sweet sorghum genotypes (high-Cd accumulation genotype 'H18', and low-Cd accumulation genotype 'L69'). A total of 1988 lncRNAs were characterized, including 52 and 69 differentially expressed lncRNAs in 'H18' and 'L69' in response to Cd stress, respectively. Furthermore, the trans- or cis-target genes of lncRNAs were investigated. Then, 65 lncRNAs were characterized as the probable target of 117 miRNAs and 1888 genes were identified as putative cis-target genes of Cd-responsive lncRNAs. The dual-luciferase reporter assay indicated lncRNA 15962 may serve as the endogenous target mimics of sbi-miR5565e, which targeted two genes (Sobic.005G212900 and Sobic.009G144700) involved in cell wall metabolism. Four cis-target genes including SbYS1 which encoding a Cd chelate transporter, were up-regulated by overexpression of their corresponding lncRNAs in sweet sorghum protoplasts, suggesting the positive regulatory role of lncRNAs to these cis-target genes. Moreover, the expression of SbYS1 decreased when lncRNA 11558 was inhibited by exogenous miRNA application in 'H18' seedlings, further demonstrating the positive regulatory role of lncRNA 11558 to SbYS1. Altogether, our findings shed light on the regulatory role of lncRNAs associated with Cd accumulation and translocation in sweet sorghum.

揭示甜高粱镉积累和转运调控的关键lncrna。
主要结论:镉处理下甜高粱根部共鉴定出1988个lncrna;lncRNA 15962和lncRNA 11558被证实是参与镉积累和转运的关键lncRNA。随着工业的发展,镉已成为危害最大、分布最广的污染物之一。甜高粱是镉污染土壤植物修复的理想植物。然而,长链非编码rna (lncRNAs)在甜高粱Cd胁迫响应中的调控作用尚不清楚。本研究对两种不同的甜高粱基因型(高cd积累基因型‘H18’和低cd积累基因型‘L69’)的根系进行了lncRNA-seq分析。共鉴定了1988个lncrna,其中‘H18’和‘L69’在Cd胁迫下分别有52个和69个差异表达的lncrna。此外,我们还研究了lncrna的反式或顺式靶基因。然后,65个lncrna被鉴定为117个mirna的可能靶标,1888个基因被鉴定为cd应答lncrna的推定顺式靶标基因。双荧光素酶报告基因实验表明,lncRNA 15962可能是sbi-miR5565e的内源性靶模拟物,sbi-miR5565e靶向两个参与细胞壁代谢的基因(Sobic.005G212900和Sobic.009G144700)。在甜高粱原生质体中,编码Cd螯合转运体的SbYS1等4个顺式靶基因通过相应lncRNAs的过表达而上调,提示lncRNAs对这些顺式靶基因具有正向调控作用。此外,当外源miRNA应用lncRNA 11558抑制H18幼苗中SbYS1的表达时,SbYS1的表达降低,进一步证明了lncRNA 11558对SbYS1的正向调节作用。总之,我们的研究结果揭示了lncrna在甜高粱中与Cd积累和转运相关的调节作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Planta
Planta 生物-植物科学
CiteScore
7.20
自引率
2.30%
发文量
217
审稿时长
2.3 months
期刊介绍: Planta publishes timely and substantial articles on all aspects of plant biology. We welcome original research papers on any plant species. Areas of interest include biochemistry, bioenergy, biotechnology, cell biology, development, ecological and environmental physiology, growth, metabolism, morphogenesis, molecular biology, new methods, physiology, plant-microbe interactions, structural biology, and systems biology.
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