Structural basis of human γ-secretase inhibition by anticancer clinical compounds

Xuefei Guo, Haotian Li, Xiaoli Lu, Hao Liu, Kaicheng U, Chuangye Yan, Jianlin Lei, Jing Huang, Rui Zhou, Yigong Shi
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Abstract

Aberrant activation of Notch signaling, mediated by the Notch intracellular domain (NICD), is linked to certain types of cancer. The NICD is released through γ-secretase-mediated cleavage of the Notch receptor. Therefore, development of a γ-secretase inhibitor (GSI) represents an anticancer strategy. Here we report the cryo-electron microscopy structures of human γ-secretase bound individually to five clinically tested GSIs (RO4929097, crenigacestat, BMS906024, nirogacestat and MK-0752) at overall resolutions of 2.4–3.0 Å. Three of the five GSIs are in active anticancer clinical trials, while nirogacestat was recently approved. Each of these GSIs similarly occupies the substrate-binding site of presenilin 1 but shows characteristic differences in detailed recognition pattern. The size and shape of the binding pocket are induced by the bound GSI. Analysis of these structural features suggest strategies for modification of the GSI with improved inhibition potency.

Abstract Image

抗癌临床化合物抑制人γ-分泌酶的结构基础
由Notch细胞内结构域(NICD)介导的Notch信号的异常激活与某些类型的癌症有关。NICD通过γ-分泌酶介导的Notch受体裂解释放。因此,开发γ-分泌酶抑制剂(GSI)代表了一种抗癌策略。在这里,我们报告了人类γ-分泌酶在总分辨率为2.4-3.0 Å下分别与五种临床测试的gsi (RO4929097, crenigacestat, BMS906024, nirogacestat和mark -0752)结合的低温电镜结构。五种gsi中有三种处于积极的抗癌临床试验中,而硝格司他最近获得批准。这些gsi类似地占据了早老素1的底物结合位点,但在详细的识别模式上表现出特征差异。装订袋的大小和形状是由装订的GSI决定的。对这些结构特征的分析提出了改进GSI抑制效能的策略。
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