A New Era in Federal Quarantine and State Certification Diagnostics at Clean Plant Centers in the USA.

IF 4.4 2区 农林科学 Q1 PLANT SCIENCES
Maher Al Rwahnih, Vicki Klaassen, Teresa Erickson, Olufemi Joseph Alabi, Kristian Stevens, Min Sook Hwang, Lauren Port
{"title":"A New Era in Federal Quarantine and State Certification Diagnostics at Clean Plant Centers in the USA.","authors":"Maher Al Rwahnih, Vicki Klaassen, Teresa Erickson, Olufemi Joseph Alabi, Kristian Stevens, Min Sook Hwang, Lauren Port","doi":"10.1094/PDIS-10-24-2104-FE","DOIUrl":null,"url":null,"abstract":"<p><p>Quarantine and certification programs exist to prevent the entry or spread of harmful pests and pathogens into agricultural systems. Their common objective is to identify pathogen-free source material through the application of validated testing methods for subsequent release for propagation. Tests must be accurate, efficient and cost-effective. In recent decades, the best tests have been biological assays in conjunction with PCR testing. High throughput sequencing (HTS) has now become a reliable and cost-effective diagnostic method having greater accuracy and efficiency than biological assays. In this article, we review the role of clean plant centers in quarantine and certification programs, as well as the process by which HTS was evaluated as a testing method to replace biological assays for screening source material. The data from this evaluation included a side-by-side comparison of HTS and biological assays for cultivars of grapevine, Prunus and rose, and intra- and inter-laboratory validations of an HTS protocol. Based on the results of these evaluations, in 2021 USDA-APHIS and several state regulatory agencies accepted the use of HTS and quantitative polymerase chain reaction (qPCR) to test new introductions of source material, replacing biological indexing. This new protocol requires testing at two timepoints within at least a six-month interval and a dormancy separating the two tests. Under ideal conditions, testing can be completed in 18-24 months with subsequent release from quarantine of plant material that has tested negative for regulated pathogens. This new testing protocol has a profound impact on quarantine and certification programs, facilitating quicker access of stakeholders to clean materials for propagation and increasing the number of pathogens that are detected, and even discovered, with reduced cost, effort, and time.</p>","PeriodicalId":20063,"journal":{"name":"Plant disease","volume":" ","pages":""},"PeriodicalIF":4.4000,"publicationDate":"2024-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plant disease","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.1094/PDIS-10-24-2104-FE","RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
引用次数: 0

Abstract

Quarantine and certification programs exist to prevent the entry or spread of harmful pests and pathogens into agricultural systems. Their common objective is to identify pathogen-free source material through the application of validated testing methods for subsequent release for propagation. Tests must be accurate, efficient and cost-effective. In recent decades, the best tests have been biological assays in conjunction with PCR testing. High throughput sequencing (HTS) has now become a reliable and cost-effective diagnostic method having greater accuracy and efficiency than biological assays. In this article, we review the role of clean plant centers in quarantine and certification programs, as well as the process by which HTS was evaluated as a testing method to replace biological assays for screening source material. The data from this evaluation included a side-by-side comparison of HTS and biological assays for cultivars of grapevine, Prunus and rose, and intra- and inter-laboratory validations of an HTS protocol. Based on the results of these evaluations, in 2021 USDA-APHIS and several state regulatory agencies accepted the use of HTS and quantitative polymerase chain reaction (qPCR) to test new introductions of source material, replacing biological indexing. This new protocol requires testing at two timepoints within at least a six-month interval and a dormancy separating the two tests. Under ideal conditions, testing can be completed in 18-24 months with subsequent release from quarantine of plant material that has tested negative for regulated pathogens. This new testing protocol has a profound impact on quarantine and certification programs, facilitating quicker access of stakeholders to clean materials for propagation and increasing the number of pathogens that are detected, and even discovered, with reduced cost, effort, and time.

求助全文
约1分钟内获得全文 求助全文
来源期刊
Plant disease
Plant disease 农林科学-植物科学
CiteScore
5.10
自引率
13.30%
发文量
1993
审稿时长
2 months
期刊介绍: Plant Disease is the leading international journal for rapid reporting of research on new, emerging, and established plant diseases. The journal publishes papers that describe basic and applied research focusing on practical aspects of disease diagnosis, development, and management.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信