The round-robin approach applied to nanoinformatics: consensus prediction of nanomaterials zeta potential.

IF 2.6 4区 材料科学 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY
Beilstein Journal of Nanotechnology Pub Date : 2024-11-29 eCollection Date: 2024-01-01 DOI:10.3762/bjnano.15.121
Dimitra-Danai Varsou, Arkaprava Banerjee, Joyita Roy, Kunal Roy, Giannis Savvas, Haralambos Sarimveis, Ewelina Wyrzykowska, Mateusz Balicki, Tomasz Puzyn, Georgia Melagraki, Iseult Lynch, Antreas Afantitis
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引用次数: 0

Abstract

A key step in building regulatory acceptance of alternative or non-animal test methods has long been the use of interlaboratory comparisons or round-robins (RRs), in which a common test material and standard operating procedure is provided to all participants, who measure the specific endpoint and return their data for statistical comparison to demonstrate the reproducibility of the method. While there is currently no standard approach for the comparison of modelling approaches, consensus modelling is emerging as a "modelling equivalent" of a RR. We demonstrate here a novel approach to evaluate the performance of different models for the same endpoint (nanomaterials' zeta potential) trained using a common dataset, through generation of a consensus model, leading to increased confidence in the model predictions and underlying models. Using a publicly available dataset, four research groups (NovaMechanics Ltd. (NovaM)-Cyprus, National Technical University of Athens (NTUA)-Greece, QSAR Lab Ltd.-Poland, and DTC Lab-India) built five distinct machine learning (ML) models for the in silico prediction of the zeta potential of metal and metal oxide-nanomaterials (NMs) in aqueous media. The individual models were integrated into a consensus modelling scheme, enhancing their predictive accuracy and reducing their biases. The consensus models outperform the individual models, resulting in more reliable predictions. We propose this approach as a valuable method for increasing the validity of nanoinformatics models and driving regulatory acceptance of in silico new approach methodologies for the use within an "Integrated Approach to Testing and Assessment" (IATA) for risk assessment of NMs.

循环方法应用于纳米信息学:纳米材料zeta电位的共识预测。
长期以来,建立替代或非动物试验方法的监管认可的关键步骤是使用实验室间比较或循环试验(rr),其中向所有参与者提供共同的测试材料和标准操作程序,他们测量特定的终点并返回他们的数据进行统计比较,以证明方法的可重复性。虽然目前还没有标准的方法来比较建模方法,但共识建模正在成为风险风险的“等效建模”。我们在这里展示了一种新的方法,通过生成共识模型来评估使用公共数据集训练的相同端点(纳米材料的zeta电位)的不同模型的性能,从而提高了模型预测和基础模型的可信度。利用公开可用的数据集,四个研究小组(novammechanics Ltd. (NovaM)-塞浦路斯,雅典国立技术大学(NTUA)-希腊,QSAR Lab Ltd.-波兰和DTC Lab-印度)建立了五种不同的机器学习(ML)模型,用于预测水介质中金属和金属氧化物纳米材料(NMs)的zeta电位。单个模型被整合到一个共识建模方案中,提高了它们的预测准确性并减少了它们的偏差。共识模型优于个体模型,导致更可靠的预测。我们提出这种方法是一种有价值的方法,可以提高纳米信息学模型的有效性,并推动监管机构接受在“测试和评估综合方法”(IATA)中用于纳米材料风险评估的硅新方法方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Beilstein Journal of Nanotechnology
Beilstein Journal of Nanotechnology NANOSCIENCE & NANOTECHNOLOGY-MATERIALS SCIENCE, MULTIDISCIPLINARY
CiteScore
5.70
自引率
3.20%
发文量
109
审稿时长
2 months
期刊介绍: The Beilstein Journal of Nanotechnology is an international, peer-reviewed, Open Access journal. It provides a unique platform for rapid publication without any charges (free for author and reader) – Platinum Open Access. The content is freely accessible 365 days a year to any user worldwide. Articles are available online immediately upon publication and are publicly archived in all major repositories. In addition, it provides a platform for publishing thematic issues (theme-based collections of articles) on topical issues in nanoscience and nanotechnology. The journal is published and completely funded by the Beilstein-Institut, a non-profit foundation located in Frankfurt am Main, Germany. The editor-in-chief is Professor Thomas Schimmel – Karlsruhe Institute of Technology. He is supported by more than 20 associate editors who are responsible for a particular subject area within the scope of the journal.
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