PlanText: Gradually Masked Guidance to Align Image Phenotypes with Trait Descriptions for Plant Disease Texts.

IF 7.6 1区 农林科学 Q1 AGRONOMY
Plant Phenomics Pub Date : 2024-11-26 eCollection Date: 2024-01-01 DOI:10.34133/plantphenomics.0272
Kejun Zhao, Xingcai Wu, Yuanyuan Xiao, Sijun Jiang, Peijia Yu, Yazhou Wang, Qi Wang
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引用次数: 0

Abstract

Plant diseases are a critical driver of the global food crisis. The integration of advanced artificial intelligence technologies can substantially enhance plant disease diagnostics. However, current methods for early and complex detection remain challenging. Employing multimodal technologies, akin to medical artificial intelligence diagnostics that combine diverse data types, may offer a more effective solution. Presently, the reliance on single-modal data predominates in plant disease research, which limits the scope for early and detailed diagnosis. Consequently, developing text modality generation techniques is essential for overcoming the limitations in plant disease recognition. To this end, we propose a method for aligning plant phenotypes with trait descriptions, which diagnoses text by progressively masking disease images. First, for training and validation, we annotate 5,728 disease phenotype images with expert diagnostic text and provide annotated text and trait labels for 210,000 disease images. Then, we propose a PhenoTrait text description model, which consists of global and heterogeneous feature encoders as well as switching-attention decoders, for accurate context-aware output. Next, to generate a more phenotypically appropriate description, we adopt 3 stages of embedding image features into semantic structures, which generate characterizations that preserve trait features. Finally, our experimental results show that our model outperforms several frontier models in multiple trait descriptions, including the larger models GPT-4 and GPT-4o. Our code and dataset are available at https://plantext.samlab.cn/.

PlanText:为植物病害文本的图像表型与性状描述对齐提供渐进式遮蔽引导。
植物病害是全球粮食危机的一个重要驱动因素。整合先进的人工智能技术可以大大提高植物病害诊断水平。然而,目前的早期和复杂检测方法仍然具有挑战性。采用多模态技术,类似于结合多种数据类型的医学人工智能诊断,可能会提供更有效的解决方案。目前,植物病害研究主要依赖单一模式数据,这限制了早期和详细诊断的范围。因此,开发文本模态生成技术对于克服植物病害识别的局限性至关重要。为此,我们提出了一种将植物表型与性状描述对齐的方法,该方法通过逐步遮蔽病害图像来诊断文本。首先,为了训练和验证,我们用专家诊断文本注释了 5,728 幅病害表型图像,并为 210,000 幅病害图像提供了注释文本和性状标签。然后,我们提出了一个 PhenoTrait 文本描述模型,该模型由全局和异构特征编码器以及切换注意力解码器组成,可实现准确的上下文感知输出。接下来,为了生成更适合表型的描述,我们采用了将图像特征嵌入语义结构的 3 个阶段,从而生成保留了性状特征的描述。最后,我们的实验结果表明,我们的模型在多个性状描述方面优于多个前沿模型,包括较大的模型 GPT-4 和 GPT-4o。我们的代码和数据集可在 https://plantext.samlab.cn/ 上获取。
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来源期刊
Plant Phenomics
Plant Phenomics Multiple-
CiteScore
8.60
自引率
9.20%
发文量
26
审稿时长
14 weeks
期刊介绍: Plant Phenomics is an Open Access journal published in affiliation with the State Key Laboratory of Crop Genetics & Germplasm Enhancement, Nanjing Agricultural University (NAU) and published by the American Association for the Advancement of Science (AAAS). Like all partners participating in the Science Partner Journal program, Plant Phenomics is editorially independent from the Science family of journals. The mission of Plant Phenomics is to publish novel research that will advance all aspects of plant phenotyping from the cell to the plant population levels using innovative combinations of sensor systems and data analytics. Plant Phenomics aims also to connect phenomics to other science domains, such as genomics, genetics, physiology, molecular biology, bioinformatics, statistics, mathematics, and computer sciences. Plant Phenomics should thus contribute to advance plant sciences and agriculture/forestry/horticulture by addressing key scientific challenges in the area of plant phenomics. The scope of the journal covers the latest technologies in plant phenotyping for data acquisition, data management, data interpretation, modeling, and their practical applications for crop cultivation, plant breeding, forestry, horticulture, ecology, and other plant-related domains.
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