Discovering the therapeutic potential of Naringenin in diabetes related to GLUT-4 and its regulatory factors: A computational approach

IF 3.8 Q2 CHEMISTRY, PHYSICAL
Ali Khakpour , Shamim Ghiabi , Ali Kazemi Babaheydari , Seyedeh Atefeh Mirahmadi , Payam Baziyar , Ehsan Heidari-Soureshjani , Mohammad Karami Horestani
{"title":"Discovering the therapeutic potential of Naringenin in diabetes related to GLUT-4 and its regulatory factors: A computational approach","authors":"Ali Khakpour ,&nbsp;Shamim Ghiabi ,&nbsp;Ali Kazemi Babaheydari ,&nbsp;Seyedeh Atefeh Mirahmadi ,&nbsp;Payam Baziyar ,&nbsp;Ehsan Heidari-Soureshjani ,&nbsp;Mohammad Karami Horestani","doi":"10.1016/j.chphi.2024.100784","DOIUrl":null,"url":null,"abstract":"<div><div>This study explores the therapeutic potential of Naringenin, a natural flavonoid, in managing Type 2 Diabetes Mellitus (T2DM) by focusing on Glucose Transporter 4 (GLUT4) and related regulatory proteins that play a role in glucose and lipid metabolism. Through bioinformatics analysis, key proteins such as Carnitine palmitoyltransferase I, mitochondrial carnitine/acylcarnitine carrier protein, and PPARγ were identified, highlighting their importance in insulin sensitivity. Molecular docking results indicated that Naringenin has a strong binding affinity for GLUT4 and PPARγ, with binding energies of -8.18 kcal/mol and -8.21 kcal/mol, respectively. This suggests that Naringenin may modulate these proteins to enhance insulin sensitivity. In contrast, its weaker binding with Enhancer-Binding Protein Alpha points to Naringenin's selective efficacy among various targets. Molecular dynamics (MD) simulations conducted over 100 ns confirmed the stability of the GLUT4-Naringenin complex, showing a reduced RMSD of 1.25 nm and a more compact structure with a Radius of Gyration (Rg) value of 2.14 nm. However, Rho-related GTP exhibited increased instability upon Naringenin binding, indicating a potential inhibitory effect. Additionally, an in silico ADMET profile revealed Naringenin's favorable pharmacokinetics, including low hepatotoxicity, no mutagenic effects, and a high maximum tolerated dose, which supports its safety for drug development. In conclusion, Naringenin shows promising potential in enhancing glucose metabolism and insulin sensitivity, positioning it as a viable candidate for future preclinical and clinical studies in T2DM management. Future research should aim to validate these computational findings through experimental methods and investigate possible synergistic effects with existing antidiabetic medications to improve treatment outcomes.</div></div>","PeriodicalId":9758,"journal":{"name":"Chemical Physics Impact","volume":"10 ","pages":"Article 100784"},"PeriodicalIF":3.8000,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chemical Physics Impact","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2667022424003281","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

This study explores the therapeutic potential of Naringenin, a natural flavonoid, in managing Type 2 Diabetes Mellitus (T2DM) by focusing on Glucose Transporter 4 (GLUT4) and related regulatory proteins that play a role in glucose and lipid metabolism. Through bioinformatics analysis, key proteins such as Carnitine palmitoyltransferase I, mitochondrial carnitine/acylcarnitine carrier protein, and PPARγ were identified, highlighting their importance in insulin sensitivity. Molecular docking results indicated that Naringenin has a strong binding affinity for GLUT4 and PPARγ, with binding energies of -8.18 kcal/mol and -8.21 kcal/mol, respectively. This suggests that Naringenin may modulate these proteins to enhance insulin sensitivity. In contrast, its weaker binding with Enhancer-Binding Protein Alpha points to Naringenin's selective efficacy among various targets. Molecular dynamics (MD) simulations conducted over 100 ns confirmed the stability of the GLUT4-Naringenin complex, showing a reduced RMSD of 1.25 nm and a more compact structure with a Radius of Gyration (Rg) value of 2.14 nm. However, Rho-related GTP exhibited increased instability upon Naringenin binding, indicating a potential inhibitory effect. Additionally, an in silico ADMET profile revealed Naringenin's favorable pharmacokinetics, including low hepatotoxicity, no mutagenic effects, and a high maximum tolerated dose, which supports its safety for drug development. In conclusion, Naringenin shows promising potential in enhancing glucose metabolism and insulin sensitivity, positioning it as a viable candidate for future preclinical and clinical studies in T2DM management. Future research should aim to validate these computational findings through experimental methods and investigate possible synergistic effects with existing antidiabetic medications to improve treatment outcomes.
发现柚皮素对糖尿病的治疗潜力与 GLUT-4 及其调控因子有关:一种计算方法
本研究通过关注葡萄糖转运体 4 (GLUT4) 和在葡萄糖和脂质代谢中发挥作用的相关调控蛋白,探索天然类黄酮柚皮素在控制 2 型糖尿病 (T2DM) 方面的治疗潜力。通过生物信息学分析,确定了肉碱棕榈酰基转移酶 I、线粒体肉碱/酰肉碱载体蛋白和 PPARγ 等关键蛋白,突出了它们在胰岛素敏感性中的重要性。分子对接结果表明,柚皮素与 GLUT4 和 PPARγ 有很强的结合亲和力,结合能分别为 -8.18 kcal/mol 和 -8.21 kcal/mol。这表明柚皮素可能会调节这些蛋白质,从而提高胰岛素敏感性。相比之下,柚皮素与增强子结合蛋白α的结合力较弱,这表明柚皮素对不同靶点具有选择性功效。超过 100 ns 的分子动力学(MD)模拟证实了 GLUT4-Naringenin 复合物的稳定性,其 RMSD 值降低了 1.25 nm,结构更加紧凑,半径(Rg)值为 2.14 nm。然而,Rho 相关 GTP 在与柚皮素结合后表现出更高的不稳定性,这表明柚皮素具有潜在的抑制作用。此外,硅学 ADMET 分析表明柚皮苷具有良好的药代动力学特性,包括低肝毒性、无突变效应和高最大耐受剂量,这支持了其药物开发的安全性。总之,柚皮苷在增强葡萄糖代谢和胰岛素敏感性方面显示出了良好的潜力,可作为未来治疗 T2DM 的临床前和临床研究的候选药物。未来的研究应旨在通过实验方法验证这些计算结果,并研究其与现有抗糖尿病药物可能产生的协同效应,以改善治疗效果。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Chemical Physics Impact
Chemical Physics Impact Materials Science-Materials Science (miscellaneous)
CiteScore
2.60
自引率
0.00%
发文量
65
审稿时长
46 days
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信