{"title":"Molecular simulation methods of evaporating electrosprayed droplets","authors":"Styliani Consta, Han Nguyen","doi":"10.1016/j.ijms.2024.117369","DOIUrl":null,"url":null,"abstract":"<div><div>A robust methodology for molecular simulations of evaporating droplets that enables comparison between the dynamics of the process of interest and the solvent evaporation rate has already been developed (Oh and Consta, 2017). The competition of these dynamics will determine the mass spectrum. However, the success of the approach depends on the accurate and effective treatment of electrostatic forces. Often, in droplet simulations, bulk solution parametrized force-fields are used where the Coulomb forces are directly taken into account with a cut-off distance longer than the droplet diameter. On the one hand this approach is inefficient for large droplets because the computational cost increases as the square of the number of the atomic sites, and on the other hand the force field is slightly different from that has been parametrized for the bulk solution. The effect of this new force field in the conformations of macromolecules is still unknown. Multilevel summation method (MSM) has been developed (Hardy et al. 2015) for the efficient treatment of electrostatic forces in non-periodic and semi-periodic systems, charged or neutral. MSM maintains the same force field in droplets as in the bulk solution. We compare MSM with direct electrostatic treatment in droplets. The comparison shows free energy differences between conformations of short peptides along the radius of gyration order parameter that indicate the need for validation of the direct method. We demonstrate the usage of MSM to study Rayleigh jet formation and charge emission from droplets. We conclude that robust approaches for droplet simulations that can be used with a force field of any complexity are available and can be implemented within many of the available open-source molecular modeling softwares. In the near future, the presented approach may provide reliable reference mass spectra for experiments, where the deviations from the experimental data may reveal valuable information about the processes that take place within the instrument.</div></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"508 ","pages":"Article 117369"},"PeriodicalIF":1.6000,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Mass Spectrometry","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1387380624001805","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"PHYSICS, ATOMIC, MOLECULAR & CHEMICAL","Score":null,"Total":0}
引用次数: 0
Abstract
A robust methodology for molecular simulations of evaporating droplets that enables comparison between the dynamics of the process of interest and the solvent evaporation rate has already been developed (Oh and Consta, 2017). The competition of these dynamics will determine the mass spectrum. However, the success of the approach depends on the accurate and effective treatment of electrostatic forces. Often, in droplet simulations, bulk solution parametrized force-fields are used where the Coulomb forces are directly taken into account with a cut-off distance longer than the droplet diameter. On the one hand this approach is inefficient for large droplets because the computational cost increases as the square of the number of the atomic sites, and on the other hand the force field is slightly different from that has been parametrized for the bulk solution. The effect of this new force field in the conformations of macromolecules is still unknown. Multilevel summation method (MSM) has been developed (Hardy et al. 2015) for the efficient treatment of electrostatic forces in non-periodic and semi-periodic systems, charged or neutral. MSM maintains the same force field in droplets as in the bulk solution. We compare MSM with direct electrostatic treatment in droplets. The comparison shows free energy differences between conformations of short peptides along the radius of gyration order parameter that indicate the need for validation of the direct method. We demonstrate the usage of MSM to study Rayleigh jet formation and charge emission from droplets. We conclude that robust approaches for droplet simulations that can be used with a force field of any complexity are available and can be implemented within many of the available open-source molecular modeling softwares. In the near future, the presented approach may provide reliable reference mass spectra for experiments, where the deviations from the experimental data may reveal valuable information about the processes that take place within the instrument.
期刊介绍:
The journal invites papers that advance the field of mass spectrometry by exploring fundamental aspects of ion processes using both the experimental and theoretical approaches, developing new instrumentation and experimental strategies for chemical analysis using mass spectrometry, developing new computational strategies for data interpretation and integration, reporting new applications of mass spectrometry and hyphenated techniques in biology, chemistry, geology, and physics.
Papers, in which standard mass spectrometry techniques are used for analysis will not be considered.
IJMS publishes full-length articles, short communications, reviews, and feature articles including young scientist features.