A glutamine metabolish-associated prognostic model to predict prognosis and therapeutic responses of hepatocellular carcinoma.

IF 5.7 2区 生物学 Q1 BIOLOGY
Hao Xu, Hui Pan, Lian Fang, Cangyuan Zhang, Chen Xiong, Weiti Cai
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引用次数: 0

Abstract

Hepatocellular carcinoma (HCC) ranks among the most lethal malignancies around the world. However, the current management strategies for predicting prognosis in HCC patients remain unreliable. Our study developed a robust prognostic model based on glutamine metabolism associated-genes (GMAGs), utilizing data from The Cancer Genome Atlas database. The prognostic values of model were validated through the databases of the Gene Expression Omnibus and International Cancer Genome Consortium via Kaplan‒Meier curves and receiver operating characteristic (ROC). The potential biological pathways associated with prognostic risk were investigated through different enrichment analysis, and Gene variation analysis. The correlation between prognostic model and therapeutic responses were analyzed. Quantitative real-time PCR (qRT-PCR) and cellular experiments were measured to analyze the GMAGs. Consequently, a prognostic model was constructed of 4 GMAGs (RRM1, RRM2, G6PD, and GPX7) through least absolute shrinkage and selection operator (LASSO) regression analysis. The Kaplan‒Meier curves and ROC curves showed a reliable predictive capacity of prognosis for HCC patients (p < 0.05). The enrichment analyses revealed a multitude of biological pathways that are significantly associated with cancer. Patients with high prognostic risk might be sensitive to immunotherapy (p < 0.05). The results of qRT-PCR revealed that all 4 GMAGs exhibited significantly higher expression levels in HCC samples compared to normal samples (p < 0.05). Moreover, the knockdown of RRM1 suppresses the progression of HCC cells. In this study, we developed a robust prognostic model for predicting the prognosis of HCC patients based on GMAGs, and identified RRM1 as a potential therapeutic target for HCC.

预测肝细胞癌预后和治疗反应的谷氨酰胺代谢相关预后模型。
肝细胞癌(HCC)是全球致死率最高的恶性肿瘤之一。然而,目前预测 HCC 患者预后的管理策略仍不可靠。我们的研究利用癌症基因组图谱数据库的数据,基于谷氨酰胺代谢相关基因(GMAGs)建立了一个稳健的预后模型。模型的预后价值通过基因表达总库(Gene Expression Omnibus)和国际癌症基因组联盟(International Cancer Genome Consortium)数据库的卡普兰-梅耶曲线(Kaplan-Meier Curves)和接收者操作特征(ROC)得到了验证。通过不同的富集分析和基因变异分析,研究了与预后风险相关的潜在生物通路。分析了预后模型与治疗反应之间的相关性。通过定量实时 PCR(qRT-PCR)和细胞实验来分析 GMAGs。因此,通过最小绝对收缩和选择算子(LASSO)回归分析,构建了4个GMAGs(RRM1、RRM2、G6PD和GPX7)的预后模型。Kaplan-Meier 曲线和 ROC 曲线显示,GMAG 对 HCC 患者的预后具有可靠的预测能力(p
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来源期刊
Biology Direct
Biology Direct 生物-生物学
CiteScore
6.40
自引率
10.90%
发文量
32
审稿时长
7 months
期刊介绍: Biology Direct serves the life science research community as an open access, peer-reviewed online journal, providing authors and readers with an alternative to the traditional model of peer review. Biology Direct considers original research articles, hypotheses, comments, discovery notes and reviews in subject areas currently identified as those most conducive to the open review approach, primarily those with a significant non-experimental component.
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