Machine-learning surrogate models for particle insertions and element substitutions.

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL
Ryosuke Jinnouchi
{"title":"Machine-learning surrogate models for particle insertions and element substitutions.","authors":"Ryosuke Jinnouchi","doi":"10.1063/5.0240275","DOIUrl":null,"url":null,"abstract":"<p><p>Two machine-learning-aided thermodynamic integration schemes to compute the chemical potentials of atoms and molecules have been developed and compared. One is the particle insertion method, and the other combines particle insertion with element substitution. In the former method, the species is gradually inserted into the liquid and its chemical potential is computed. In the latter method, after the particle insertion, the inserted species is substituted with another species, and the chemical potential of this new species is computed. In both methods, the thermodynamic integrations are conducted using machine-learned potentials trained on first-principles datasets. The errors of the machine-learned surrogate models are further corrected by performing thermodynamic integrations from the machine-learned potentials to the first-principles potentials, accurately providing the first-principles chemical potentials. These two methods are applied to compute the real potentials of proton, alkali metal cations, and halide anions in water. The applications indicate that these two entirely different thermodynamic pathways yield identical real potentials within statistical error bars, demonstrating that both methods provide reproducible real potentials. The computed real potentials and solvation structures are also in good agreement with past experiments and simulations. These results indicate that machine-learning surrogate models enabling particle insertion and element substitution provide a precise method for determining the chemical potentials of atoms and molecules.</p>","PeriodicalId":15313,"journal":{"name":"Journal of Chemical Physics","volume":"161 19","pages":""},"PeriodicalIF":3.1000,"publicationDate":"2024-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Physics","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1063/5.0240275","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Two machine-learning-aided thermodynamic integration schemes to compute the chemical potentials of atoms and molecules have been developed and compared. One is the particle insertion method, and the other combines particle insertion with element substitution. In the former method, the species is gradually inserted into the liquid and its chemical potential is computed. In the latter method, after the particle insertion, the inserted species is substituted with another species, and the chemical potential of this new species is computed. In both methods, the thermodynamic integrations are conducted using machine-learned potentials trained on first-principles datasets. The errors of the machine-learned surrogate models are further corrected by performing thermodynamic integrations from the machine-learned potentials to the first-principles potentials, accurately providing the first-principles chemical potentials. These two methods are applied to compute the real potentials of proton, alkali metal cations, and halide anions in water. The applications indicate that these two entirely different thermodynamic pathways yield identical real potentials within statistical error bars, demonstrating that both methods provide reproducible real potentials. The computed real potentials and solvation structures are also in good agreement with past experiments and simulations. These results indicate that machine-learning surrogate models enabling particle insertion and element substitution provide a precise method for determining the chemical potentials of atoms and molecules.

粒子插入和元素替换的机器学习代用模型。
我们开发并比较了两种机器学习辅助热力学整合方案,用于计算原子和分子的化学势。一种是粒子插入法,另一种是粒子插入与元素替换相结合的方法。在前一种方法中,物种被逐渐插入液体并计算其化学势。在后一种方法中,粒子插入后,插入的物种被另一物种取代,并计算这一新物种的化学势。在这两种方法中,热力学积分都是使用在第一原理数据集上训练的机器学习化学势进行的。通过从机器学习的化学势到第一原理化学势的热力学积分,进一步修正机器学习代用模型的误差,从而准确提供第一原理化学势。这两种方法被应用于计算质子、碱金属阳离子和卤化物阴离子在水中的真实电位。应用结果表明,这两种完全不同的热力学途径产生的实际电势在统计误差范围内完全相同,证明这两种方法都能提供可重复的实际电势。计算出的实际电位和溶解结构也与过去的实验和模拟结果十分吻合。这些结果表明,机器学习代用模型可以实现粒子插入和元素置换,为确定原子和分子的化学势提供了一种精确的方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信