The early dodder gets the host: decoding the coiling patterns of Cuscuta campestris with automated image processing.

IF 5.3 2区 生物学 Q1 PLANT SCIENCES
Max Bentelspacher, Erik J Amézquita, Supral Adhikari, Jaime Barros, So-Yon Park
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引用次数: 0

Abstract

Key message: We developed an in-house Python-based image analysis pipeline to investigate the movement patterns of Cuscuta. Our analysis unveiled that the coiling and circumnutation movements of Cuscuta are regulated by its intrinsic circadian rhythm. Cuscuta spp., commonly known as dodders, are rootless and leafless stem parasitic plants. Upon germination, Cuscuta starts rotating immediately in a counterclockwise direction (circumnutation) to locate a host plant, creating a seamless vascular connection to steal water and nutrients from its host. In this study, our aim was to elucidate the dynamics of the coiling patterns of Cuscuta, which is an essential step for successful parasitism. Using time-lapse photography, we recorded the circumnutation and coiling movements of C. campestris at different inoculation times on non-living hosts. Subsequent image analyses were facilitated through an in-house Python-based image processing pipeline to detect coiling locations, angles, initiation and completion times, and duration of coiling stages in between. The study revealed that the coiling efficacy of C. campestris varied with the inoculation time of day, showing higher success and faster initiation in morning than in evening. These observations suggest that Cuscuta, despite lacking leaves and a developed chloroplast, can discern photoperiod changes, significantly determining its parasitic efficiency. The automated image analysis results confirmed the reliability of our Python pipeline by aligning closely with manual annotations. This study provides significant insights into the parasitic strategies of C. campestris and demonstrates the potential of integrating computational image analysis in plant biology for exploring complex plant behaviors. Furthermore, this method provides an efficient tool for investigating plant movement dynamics, laying the foundation for future studies on mitigating the economic impacts of parasitic plants.

早期菟丝子获得宿主:利用自动图像处理技术解码菟丝子的卷曲模式。
关键信息:我们开发了一个基于 Python 的内部图像分析管道来研究菟丝子的运动模式。我们的分析揭示了菟丝子的盘绕和环绕运动受其固有昼夜节律的调节。菟丝子俗称 "菟丝子",是一种无根无叶的茎寄生植物。菟丝子发芽后立即开始逆时针方向旋转(环行),以找到寄主植物,建立无缝的维管连接,从寄主处窃取水分和养分。在这项研究中,我们的目的是阐明菟丝子卷曲模式的动态变化,这是成功寄生的关键步骤。通过延时摄影,我们记录了野油菜蛛在非生物宿主上不同接种时间的环行和盘绕运动。随后通过基于 Python- 的内部图像处理管道进行图像分析,以检测盘绕位置、角度、开始和结束时间以及中间盘绕阶段的持续时间。研究发现,野油菜菌的卷曲效果随一天中接种时间的不同而变化,早上比晚上成功率更高,卷曲速度更快。这些观察结果表明,尽管菟丝子没有叶片和发达的叶绿体,但它能辨别光周期的变化,这在很大程度上决定了它的寄生效率。自动图像分析结果证实了我们的 Python 工具的可靠性,与人工注释结果非常吻合。这项研究为深入了解野油菜菌的寄生策略提供了重要依据,并展示了将计算图像分析整合到植物生物学中以探索复杂植物行为的潜力。此外,这种方法还为研究植物的运动动态提供了一种有效的工具,为未来减轻寄生植物对经济影响的研究奠定了基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Plant Cell Reports
Plant Cell Reports 生物-植物科学
CiteScore
10.80
自引率
1.60%
发文量
135
审稿时长
3.2 months
期刊介绍: Plant Cell Reports publishes original, peer-reviewed articles on new advances in all aspects of plant cell science, plant genetics and molecular biology. Papers selected for publication contribute significant new advances to clearly identified technological problems and/or biological questions. The articles will prove relevant beyond the narrow topic of interest to a readership with broad scientific background. The coverage includes such topics as: - genomics and genetics - metabolism - cell biology - abiotic and biotic stress - phytopathology - gene transfer and expression - molecular pharming - systems biology - nanobiotechnology - genome editing - phenomics and synthetic biology The journal also publishes opinion papers, review and focus articles on the latest developments and new advances in research and technology in plant molecular biology and biotechnology.
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