Designing a multi-epitope subunit vaccine against Toxoplasma gondii through reverse vaccinology approach

IF 1.4 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Nadim Ahmed , Nurul Amin Rani , Tanjin Barketullah Robin , Md. Nafij Mashrur , Md Minhajul Islam Shovo , Anindita Ash Prome , Sadia Sultana , Mst Rubaiat Nazneen Akhand
{"title":"Designing a multi-epitope subunit vaccine against Toxoplasma gondii through reverse vaccinology approach","authors":"Nadim Ahmed ,&nbsp;Nurul Amin Rani ,&nbsp;Tanjin Barketullah Robin ,&nbsp;Md. Nafij Mashrur ,&nbsp;Md Minhajul Islam Shovo ,&nbsp;Anindita Ash Prome ,&nbsp;Sadia Sultana ,&nbsp;Mst Rubaiat Nazneen Akhand","doi":"10.1016/j.molbiopara.2024.111655","DOIUrl":null,"url":null,"abstract":"<div><div>The parasite <em>Toxoplasma gondii</em>, or <em>T. gondii</em>, is zoonotic that both individuals as well as animals can contract resulting in toxoplasmosis, a life-threatening illness. We used an immunoinformatic technique in our research to construct a vaccine with multi-epitopes so that it can decrease the devastating impact caused by this dangerous parasite. In order to construct the vaccine, GRA6 and MIC3 proteins were targeted, which are engaged in <em>T. gondii</em> identification, infection, and immune response. Novel epitopes for linear B lymphocytes (LBL), cytotoxic T lymphocytes (CTL), and helper T lymphocytes (HTL) were found by epitope mapping, every anticipated epitope was assessed through rigorous screening to determine the top choices for epitopes which were entirely preserved, very antigenic in nature, nonallergenic, and nontoxic. 4 CTLs, 3 HTLs and 4 LBL epitopes were chosen and combined along with proper linkers and adjuvants to design a vaccine with several epitopes. Linkers as well as adjuvants were provided to make the vaccine more immunogenic, antigenic, and stable. The proposed vaccination was identified to possess the necessary biophysical properties, be soluble, extremely antigenic, and non-allergic. Reliability of the vaccine design was demonstrated by secondary along with tertiary structure prediction. It was anticipated that the vaccine's three-dimensional structure would likely link up with TLR-2 and TLR-4 via the investigation of molecular docking. TLR-2 and TLR-4 are crucial for the parasite's invasion and the body's response. In our docking investigation, both TLRs demonstrated strong binding affinities utilizing the vaccine structure. After that, the vaccine construct's elevated expression rate, which was observed in <em>Escherichia coli</em> strain K12, was confirmed by an investigation using in silico cloning and codon adaptation. The results of the research are really encouraging and some properties of the vaccine were found to be significantly better than existing the <em>T. gondii</em> multi-epitope vaccination based on the same proteins. Nonetheless, <em>in vivo</em> trials are strongly suggested for potential future studies.</div></div>","PeriodicalId":18721,"journal":{"name":"Molecular and biochemical parasitology","volume":"260 ","pages":"Article 111655"},"PeriodicalIF":1.4000,"publicationDate":"2024-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Molecular and biochemical parasitology","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0166685124000483","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

The parasite Toxoplasma gondii, or T. gondii, is zoonotic that both individuals as well as animals can contract resulting in toxoplasmosis, a life-threatening illness. We used an immunoinformatic technique in our research to construct a vaccine with multi-epitopes so that it can decrease the devastating impact caused by this dangerous parasite. In order to construct the vaccine, GRA6 and MIC3 proteins were targeted, which are engaged in T. gondii identification, infection, and immune response. Novel epitopes for linear B lymphocytes (LBL), cytotoxic T lymphocytes (CTL), and helper T lymphocytes (HTL) were found by epitope mapping, every anticipated epitope was assessed through rigorous screening to determine the top choices for epitopes which were entirely preserved, very antigenic in nature, nonallergenic, and nontoxic. 4 CTLs, 3 HTLs and 4 LBL epitopes were chosen and combined along with proper linkers and adjuvants to design a vaccine with several epitopes. Linkers as well as adjuvants were provided to make the vaccine more immunogenic, antigenic, and stable. The proposed vaccination was identified to possess the necessary biophysical properties, be soluble, extremely antigenic, and non-allergic. Reliability of the vaccine design was demonstrated by secondary along with tertiary structure prediction. It was anticipated that the vaccine's three-dimensional structure would likely link up with TLR-2 and TLR-4 via the investigation of molecular docking. TLR-2 and TLR-4 are crucial for the parasite's invasion and the body's response. In our docking investigation, both TLRs demonstrated strong binding affinities utilizing the vaccine structure. After that, the vaccine construct's elevated expression rate, which was observed in Escherichia coli strain K12, was confirmed by an investigation using in silico cloning and codon adaptation. The results of the research are really encouraging and some properties of the vaccine were found to be significantly better than existing the T. gondii multi-epitope vaccination based on the same proteins. Nonetheless, in vivo trials are strongly suggested for potential future studies.
通过反向疫苗学方法设计针对刚地弓形虫的多表位亚单位疫苗
弓形虫(Toxoplasma gondii)是一种人畜共通的寄生虫,人和动物都可能感染这种寄生虫,导致弓形虫病,这是一种危及生命的疾病。我们在研究中使用了一种免疫形式化技术,以构建一种具有多表位的疫苗,从而减少这种危险寄生虫造成的破坏性影响。为了构建疫苗,我们以 GRA6 和 MIC3 蛋白为靶标,它们参与了淋球菌的识别、感染和免疫反应。通过表位图谱发现了线性 B 淋巴细胞 (LBL)、细胞毒性 T 淋巴细胞 (CTL) 和辅助性 T 淋巴细胞 (HTL) 的新表位,并对每个预期表位进行了严格的筛选评估,以确定表位的最佳选择,这些表位完全保留,具有很强的抗原性、非过敏性和无毒性。我们选择了 4 个 CTL、3 个 HTL 和 4 个 LBL 表位,并将它们与适当的连接剂和佐剂结合起来,设计出了具有多个表位的疫苗。连接剂和佐剂可使疫苗更具免疫原性、抗原性和稳定性。经鉴定,拟议的疫苗具有必要的生物物理特性、可溶性、极强的抗原性和非过敏性。通过二级和三级结构预测,证明了疫苗设计的可靠性。通过分子对接研究,预计疫苗的三维结构很可能与 TLR-2 和 TLR-4 相连。TLR-2 和 TLR-4 对寄生虫的入侵和人体的反应至关重要。在我们的对接研究中,这两个 TLR 与疫苗结构的结合亲和力很强。之后,通过使用硅克隆和密码子适应进行调查,证实了在大肠杆菌 K12 菌株中观察到的疫苗构建体的高表达率。研究结果确实令人鼓舞,发现该疫苗的某些特性明显优于基于相同蛋白质的现有淋球菌多位点疫苗。不过,我们强烈建议在未来的潜在研究中进行体内试验。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
CiteScore
2.90
自引率
0.00%
发文量
51
审稿时长
63 days
期刊介绍: The journal provides a medium for rapid publication of investigations of the molecular biology and biochemistry of parasitic protozoa and helminths and their interactions with both the definitive and intermediate host. The main subject areas covered are: • the structure, biosynthesis, degradation, properties and function of DNA, RNA, proteins, lipids, carbohydrates and small molecular-weight substances • intermediary metabolism and bioenergetics • drug target characterization and the mode of action of antiparasitic drugs • molecular and biochemical aspects of membrane structure and function • host-parasite relationships that focus on the parasite, particularly as related to specific parasite molecules. • analysis of genes and genome structure, function and expression • analysis of variation in parasite populations relevant to genetic exchange, pathogenesis, drug and vaccine target characterization, and drug resistance. • parasite protein trafficking, organelle biogenesis, and cellular structure especially with reference to the roles of specific molecules • parasite programmed cell death, development, and cell division at the molecular level.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信