Slow global motions in biosolids studied by the deuteron stimulated echo NMR experiment.

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL
Alexey Krushelnitsky, Farhad Shahsavan, Günter Hempel, Nail Fatkullin
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引用次数: 0

Abstract

Recent 15N R1ρ-relaxation studies have shown that proteins in the solid state undergo slow, low amplitude global motion in the sub-millisecond time range. This range is at the edge of the time window for R1ρ experiments and, therefore, the motional parameters obtained by this method are not precise or reliable. In this paper, we present a 2H stimulated echo study of this type of molecular dynamics. The 2H stimulated echo experiments on a static sample allow for direct measurement of the correlation function in the time range of 10-6-10-1 s, making them well suited to study this type of molecular mobility. We have conducted a detailed analytical and numerical comparison of the correlation functions obtained from the relaxation and stimulated echo experiments, which are generally different. We have identified conditions and algorithms that enable a direct comparison of the relaxation and stimulated echo experimental results. Using the protein GB1 in the form of a lyophilized powder, we have demonstrated that 15N R1ρ-relaxation and 2H stimulated echo experiments yield essentially the same slow-motion correlation function. Surprisingly, this type of motion is observed not only in the protein sample but also in the tripeptide and single amino acid solid samples. The comparison of data measured in these three samples at different temperatures led us to conclude that this slow motion is, in fact, ultrasonic phonons, which seem to be inherent to all rigid biological solids.

通过氘核刺激回波核磁共振实验研究生物固体中的缓慢全局运动。
最近的 15N R1ρ 松弛研究表明,固态蛋白质在亚毫秒时间范围内会发生缓慢、低振幅的全局运动。这个时间范围处于 R1ρ 实验时间窗的边缘,因此用这种方法获得的运动参数并不精确或可靠。在本文中,我们介绍了对这类分子动力学的 2H 受激回波研究。在静态样品上进行 2H 激发回波实验可以直接测量 10-6-10-1 秒时间范围内的相关函数,因此非常适合研究这类分子运动。我们对从弛豫实验和受激回波实验中获得的相关函数进行了详细的分析和数值比较,这两种实验的相关函数通常是不同的。我们确定了能够直接比较弛豫和刺激回波实验结果的条件和算法。利用冻干粉末形式的蛋白质 GB1,我们证明了 15N R1ρ 松弛实验和 2H 受激回波实验产生的慢动作相关函数基本相同。令人惊讶的是,不仅在蛋白质样品中,而且在三肽和单一氨基酸固体样品中都观察到了这种运动。通过比较这三种样品在不同温度下测得的数据,我们得出结论:这种慢动作实际上是超声声子,似乎是所有刚性生物固体所固有的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
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