A matrix-centered view of mass spectrometry platform innovation for volatilome research.

IF 3.9 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Frontiers in Molecular Biosciences Pub Date : 2024-10-30 eCollection Date: 2024-01-01 DOI:10.3389/fmolb.2024.1421330
Andras Szeitz, Annika G Sutton, Steven J Hallam
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引用次数: 0

Abstract

Volatile organic compounds (VOCs) are carbon-containing molecules with high vapor pressure and low water solubility that are released from biotic and abiotic matrices. Because they are in the gaseous phase, these compounds tend to remain undetected when using conventional metabolomic profiling methods. Despite this omission, efforts to profile VOCs can provide useful information related to metabolic status and identify potential signaling pathways or toxicological impacts in natural or engineered environments. Over the past several decades mass spectrometry (MS) platform innovation has instigated new opportunities for VOC detection from previously intractable matrices. In parallel, volatilome research linking VOC profiles to other forms of multi-omic information (DNA, RNA, protein, and other metabolites) has gained prominence in resolving genotype/phenotype relationships at different levels of biological organization. This review explores both on-line and off-line methods used in VOC profiling with MS from different matrices. On-line methods involve direct sample injection into the MS platform without any prior compound separation, while off-line methods involve chromatographic separation prior to sample injection and analyte detection. Attention is given to the technical evolution of platforms needed for increasingly resolved VOC profiles, tracing technical progress over time with particular emphasis on emerging microbiome and diagnostic applications.

以矩阵为中心的质谱平台创新,促进挥发性有机物研究。
挥发性有机化合物(VOC)是从生物和非生物基质中释放出来的具有高蒸汽压和低水溶性的含碳分子。由于这些化合物处于气态,使用传统的代谢组学分析方法往往无法检测到它们。尽管存在这种遗漏,但对挥发性有机化合物进行分析可以提供与代谢状态有关的有用信息,并确定自然环境或工程环境中的潜在信号通路或毒理影响。过去几十年来,质谱(MS)平台的创新为从以前难以解决的基质中检测挥发性有机化合物带来了新的机遇。与此同时,将挥发性有机化合物图谱与其他形式的多原子信息(DNA、RNA、蛋白质和其他代谢物)联系起来的挥发性有机化合物研究在解决生物组织不同层次的基因型/表型关系方面也取得了突出的成绩。本综述探讨了利用 MS 对不同基质中的挥发性有机化合物进行分析的在线和离线方法。在线方法是将样品直接注入质谱平台,无需事先进行化合物分离,而离线方法则是在注入样品和检测分析物之前进行色谱分离。本报告关注日益分辨的挥发性有机化合物分析所需的平台的技术演变,追踪随时间推移取得的技术进步,特别强调新兴的微生物组和诊断应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Frontiers in Molecular Biosciences
Frontiers in Molecular Biosciences Biochemistry, Genetics and Molecular Biology-Biochemistry
CiteScore
7.20
自引率
4.00%
发文量
1361
审稿时长
14 weeks
期刊介绍: Much of contemporary investigation in the life sciences is devoted to the molecular-scale understanding of the relationships between genes and the environment — in particular, dynamic alterations in the levels, modifications, and interactions of cellular effectors, including proteins. Frontiers in Molecular Biosciences offers an international publication platform for basic as well as applied research; we encourage contributions spanning both established and emerging areas of biology. To this end, the journal draws from empirical disciplines such as structural biology, enzymology, biochemistry, and biophysics, capitalizing as well on the technological advancements that have enabled metabolomics and proteomics measurements in massively parallel throughput, and the development of robust and innovative computational biology strategies. We also recognize influences from medicine and technology, welcoming studies in molecular genetics, molecular diagnostics and therapeutics, and nanotechnology. Our ultimate objective is the comprehensive illustration of the molecular mechanisms regulating proteins, nucleic acids, carbohydrates, lipids, and small metabolites in organisms across all branches of life. In addition to interesting new findings, techniques, and applications, Frontiers in Molecular Biosciences will consider new testable hypotheses to inspire different perspectives and stimulate scientific dialogue. The integration of in silico, in vitro, and in vivo approaches will benefit endeavors across all domains of the life sciences.
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