Can Transcriptomics Elucidate the Role of Regulation in Invasion Success?

IF 4.5 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Amy L Vaughan, Manpreet K Dhami
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引用次数: 0

Abstract

When a species invades a novel environment, it must bridge the environment-phenotype mismatch in its new range to persist. Contemporary invasion biology research has focused on the role that trait variation and adaptation, and their underlying genomic factors, play in a species' adaptive potential, and thus facilitating invasion. Empirical studies have provided valuable insights into phenotypes that persist and arise in novel environments, coupled with 'omics tools that further the understanding of the contributions of genomic architecture in species establishment. Particularly, the use of transcriptomics to explore the role of plasticity in the initial stages of an invasion is growing. Here, we assess the role of various mechanisms relating to regulation and functional adaptation (often measured via the transcriptome) that support trait-specific plasticity in invasive species, allowing phenotypic variability without directly altering genomic diversity. First, we present a comprehensive review of the studies utilising transcriptomics in invasion biology. Second, we collate the evidence for and against the role of a range of regulatory processes in contributing to invasive species plasticity. Finally, we pose open questions in invasion biology where the use of transcriptome data may be valuable, as well as discuss the methodological limitations.

转录组学能否阐明调控在入侵成功中的作用?
当一个物种入侵一个新的环境时,它必须弥合其新分布区的环境-表型不匹配问题,才能持续生存下去。当代入侵生物学研究的重点是性状变异和适应性及其潜在的基因组因素在物种适应潜力中的作用,从而促进入侵。经验性研究为了解在新环境中持续存在和出现的表型提供了宝贵的见解,而'omics'工具则进一步加深了人们对基因组结构在物种建立过程中所作贡献的理解。特别是,利用转录组学探索可塑性在入侵初始阶段所起作用的研究越来越多。在这里,我们将评估与调控和功能适应有关的各种机制(通常通过转录组进行测量)的作用,这些机制支持入侵物种的特异性可塑性,从而在不直接改变基因组多样性的情况下实现表型变异。首先,我们全面回顾了入侵生物学中利用转录组学进行的研究。其次,我们整理了支持和反对一系列调控过程在促进入侵物种可塑性方面作用的证据。最后,我们提出了入侵生物学中利用转录组数据可能有价值的开放性问题,并讨论了方法上的局限性。
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来源期刊
Molecular Ecology
Molecular Ecology 生物-进化生物学
CiteScore
8.40
自引率
10.20%
发文量
472
审稿时长
1 months
期刊介绍: Molecular Ecology publishes papers that utilize molecular genetic techniques to address consequential questions in ecology, evolution, behaviour and conservation. Studies may employ neutral markers for inference about ecological and evolutionary processes or examine ecologically important genes and their products directly. We discourage papers that are primarily descriptive and are relevant only to the taxon being studied. Papers reporting on molecular marker development, molecular diagnostics, barcoding, or DNA taxonomy, or technical methods should be re-directed to our sister journal, Molecular Ecology Resources. Likewise, papers with a strongly applied focus should be submitted to Evolutionary Applications. Research areas of interest to Molecular Ecology include: * population structure and phylogeography * reproductive strategies * relatedness and kin selection * sex allocation * population genetic theory * analytical methods development * conservation genetics * speciation genetics * microbial biodiversity * evolutionary dynamics of QTLs * ecological interactions * molecular adaptation and environmental genomics * impact of genetically modified organisms
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