Global impacts of peroxisome and pexophagy dysfunction revealed through multi-omics analyses of lon2 and atg2 mutants

IF 6.2 1区 生物学 Q1 PLANT SCIENCES
DurreShahwar Muhammad, Natalie M. Clark, Nathan E. Tharp, Elizabeth C. Chatt, Richard D. Vierstra, Bonnie Bartel
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Abstract

Peroxisomes house diverse metabolic pathways that are essential for plant and animal survival, including enzymes that produce or inactivate toxic byproducts. Despite the importance of peroxisomes and their collaborations with other organelles, the mechanisms that trigger or prevent peroxisome turnover and the cellular impacts of impaired peroxisomes are incompletely understood. When Arabidopsis thaliana LON2, a peroxisomal protein with chaperone and protease capacity, is disrupted, metabolic dysfunction and protein instability in peroxisomes ensue. Paradoxically, preventing autophagy in lon2 mutants appears to normalize peroxisomal metabolism and stabilize peroxisomal proteins—hinting at a role for autophagy in causing the peroxisomal defects observed in lon2 seedlings. Using a combination of transcriptomics, proteomics, and in silico investigations, we compared wild type to lon2 and autophagy null mutants and double mutants. Through this analysis, we found that impeding autophagy via an atg2 null mutation alleviated several of the global defects observed when LON2 is absent. Moreover, we revealed processes influenced by LON2 that are independent of autophagy, including impacts on lipid droplet and chloroplast protein levels. Finally, we identified and classified potential LON2 substrates, which include proteins that might provide signal(s) for pexophagy.

Abstract Image

通过对lon2和atg2突变体进行多组学分析,揭示过氧化物酶体和pexophagy功能障碍的全球影响。
过氧物酶体容纳了植物和动物生存所必需的多种代谢途径,包括产生或灭活有毒副产物的酶。尽管过氧物酶体及其与其他细胞器的协作非常重要,但人们对引发或阻止过氧物酶体更替的机制以及过氧物酶体受损对细胞的影响却知之甚少。拟南芥 LON2 是一种具有伴侣蛋白和蛋白酶能力的过氧物酶体蛋白,当它被破坏时,过氧物酶体中的代谢功能障碍和蛋白质不稳定性随之而来。矛盾的是,阻止 lon2 突变体中的自噬似乎能使过氧物酶体代谢正常化并稳定过氧物酶体蛋白--这暗示自噬在造成 lon2 幼苗中观察到的过氧物酶体缺陷中的作用。通过结合使用转录组学、蛋白质组学和硅学研究,我们比较了野生型和 lon2 以及自噬无效突变体和双突变体。通过这一分析,我们发现通过atg2无效突变抑制自噬可以缓解LON2缺失时观察到的几种整体缺陷。此外,我们还发现了受 LON2 影响的独立于自噬的过程,包括对脂滴和叶绿体蛋白水平的影响。最后,我们对潜在的 LON2 底物进行了鉴定和分类,其中包括可能为自噬提供信号的蛋白质。
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来源期刊
The Plant Journal
The Plant Journal 生物-植物科学
CiteScore
13.10
自引率
4.20%
发文量
415
审稿时长
2.3 months
期刊介绍: Publishing the best original research papers in all key areas of modern plant biology from the world"s leading laboratories, The Plant Journal provides a dynamic forum for this ever growing international research community. Plant science research is now at the forefront of research in the biological sciences, with breakthroughs in our understanding of fundamental processes in plants matching those in other organisms. The impact of molecular genetics and the availability of model and crop species can be seen in all aspects of plant biology. For publication in The Plant Journal the research must provide a highly significant new contribution to our understanding of plants and be of general interest to the plant science community.
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