Synergistic Modeling of Liquid Properties: Integrating Neural Network-Derived Molecular Features with Modified Kernel Models.

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL
Journal of Chemical Theory and Computation Pub Date : 2024-11-26 Epub Date: 2024-11-13 DOI:10.1021/acs.jctc.4c00961
Hyuntae Lim, YounJoon Jung
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引用次数: 0

Abstract

A significant challenge in applying machine learning to computational chemistry, particularly considering the growing complexity of contemporary machine learning models, is the scarcity of available experimental data. To address this issue, we introduce an approach that derives molecular features from an intricate neural network-based model and applies them to a simpler conventional machine learning model that is robust to overfitting. This method can be applied to predict various properties of a liquid system, including viscosity or surface tension, based on molecular features drawn from the ab initio calculated free energy of solvation. Furthermore, we propose a modified kernel model that includes Arrhenius temperature dependence to incorporate theoretical principles and diminish extreme nonlinearity in the model. The modified kernel model demonstrated significant improvements in certain scenarios and possible extensions to various theoretical concepts of molecular systems.

液体特性的协同建模:神经网络分子特征与修正核模型的整合
将机器学习应用于计算化学的一个重大挑战,尤其是考虑到当代机器学习模型日益复杂,是可用实验数据的匮乏。为了解决这个问题,我们引入了一种方法,从基于复杂神经网络的模型中得出分子特征,并将其应用于一个较简单的传统机器学习模型,该模型对过拟合具有鲁棒性。这种方法可以应用于预测液体系统的各种特性,包括粘度或表面张力,其依据是从原子力计算的溶解自由能中提取的分子特征。此外,我们还提出了一个包含阿伦尼斯温度依赖性的修正核模型,以纳入理论原则并减少模型中的极端非线性。改进后的内核模型在某些情况下表现出显著的改进,并有可能扩展到分子系统的各种理论概念。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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