Automated acute skin toxicity scoring in a mouse model through deep learning.

IF 1.5 4区 环境科学与生态学 Q3 BIOLOGY
Morten Sahlertz, Line Kristensen, Brita Singers Sørensen, Per Rugaard Poulsen, Folefac Charlemagne Asonganyi, Priyanshu Sinha, Jasper Nijkamp
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引用次数: 0

Abstract

This study presents a novel approach to skin toxicity assessment in preclinical radiotherapy trials through an advanced imaging setup and deep learning. Skin reactions, commonly associated with undesirable side effects in radiotherapy, were meticulously evaluated in 160 mice across four studies. A comprehensive dataset containing 7542 images was derived from proton/electron trials with matched manual scoring of the acute toxicity on the right hind leg, which was the target area irradiated in the trials. This dataset was the foundation for the subsequent model training. The two-step deep learning framework incorporated an object detection model for hind leg detection and a classification model for toxicity classification. An observer study involving five experts and the deep learning model, was conducted to analyze the retrospective capabilities and inter-observer variations. The results revealed that the hind leg object detection model exhibited a robust performance, achieving an accuracy of almost 99%. Subsequently, the classification model demonstrated an overall accuracy of about 85%, revealing nuanced challenges in specific toxicity grades. The observer study highlighted high inter-observer agreement and showcased the model's superiority in accuracy and misclassification distance. In conclusion, this study signifies an advancement in objective and reproducible skin toxicity assessment. The imaging and deep learning system not only allows for retrospective toxicity scoring, but also presents a potential for minimizing inter-observer variation and evaluation times, addressing critical gaps in manual scoring methodologies. Future recommendations include refining the system through an expanded training dataset, paving the way for its deployment in preclinical research and radiotherapy trials.

通过深度学习在小鼠模型中自动进行急性皮肤毒性评分。
本研究通过先进的成像装置和深度学习,提出了一种在临床前放疗试验中进行皮肤毒性评估的新方法。皮肤反应通常与放疗中的不良副作用有关,本研究对四项研究中的 160 只小鼠进行了细致评估。从质子/电子试验中获得了包含 7542 幅图像的综合数据集,并对试验中照射的目标区域右后腿的急性毒性进行了匹配的人工评分。该数据集是后续模型训练的基础。两步式深度学习框架包含一个用于后腿检测的对象检测模型和一个用于毒性分类的分类模型。为了分析回溯能力和观察者之间的差异,进行了一项由五位专家和深度学习模型参与的观察者研究。研究结果表明,后腿物体检测模型表现稳健,准确率接近 99%。随后,分类模型的总体准确率约为 85%,揭示了特定毒性等级中的细微挑战。观察者研究强调了观察者之间的高度一致,并展示了该模型在准确性和误分类距离方面的优势。总之,这项研究标志着在客观、可重复的皮肤毒性评估方面取得了进展。成像和深度学习系统不仅可以进行回顾性毒性评分,还能最大限度地减少观察者之间的差异和评估时间,弥补人工评分方法的不足。未来的建议包括通过扩大训练数据集来完善该系统,为其在临床前研究和放疗试验中的应用铺平道路。
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来源期刊
CiteScore
4.00
自引率
5.90%
发文量
53
审稿时长
>36 weeks
期刊介绍: This journal is devoted to fundamental and applied issues in radiation research and biophysics. The topics may include: Biophysics of ionizing radiation: radiation physics and chemistry, radiation dosimetry, radiobiology, radioecology, biophysical foundations of medical applications of radiation, and radiation protection. Biological effects of radiation: experimental or theoretical work on molecular or cellular effects; relevance of biological effects for risk assessment; biological effects of medical applications of radiation; relevance of radiation for biosphere and in space; modelling of ecosystems; modelling of transport processes of substances in biotic systems. Risk assessment: epidemiological studies of cancer and non-cancer effects; quantification of risk including exposures to radiation and confounding factors Contributions to these topics may include theoretical-mathematical and experimental material, as well as description of new techniques relevant for the study of these issues. They can range from complex radiobiological phenomena to issues in health physics and environmental protection.
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