A rapid method for assessing seed drought resistance using integrated ID-BOA-SVM.

IF 2.7 3区 化学 Q2 CHEMISTRY, ANALYTICAL
Qiaohan Wu, Xiaoyu Zhao, Biqing Zhou, Jiangcheng Liao, Qian Luo, Yue Zhao, Lijing Cai, Zhe Zhai, Liang Tong
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引用次数: 0

Abstract

This study investigates the application of near-infrared spectroscopy (NIR) for assessing drought resistance in seeds, aiming to offer a rapid and efficient method suitable for large-scale primary screening. NIR spectroscopy is utilized to analyze four key factors (water, sugars, amino acids content, and genes) associated with maize seed drought responses. Signature NIR bands indicative of drought resistance-related molecules are identified using the Competitive Adaptive Reweighted Sampling (CARS) technique. Furthermore, an Improved Discrete Bayesian Optimization Support Vector Machine (ID-BOA-SVM) classification model is developed to address issues related to sparse features in traditional Bayesian Optimization Support Vector Machines (BOA-SVM). To enhance classification performance, a stacking model integrating Random Forest (RF), ID-BOA-SVM, Logistic Regression (LR), and Gradient Boosted Decision Trees (GBDT) classifiers is constructed, ensuring robustness and minimizing overfitting risks. The model achieves satisfactory recognition accuracy (94.28% accuracy, 94% precision, 94.61% recall, and 94.23% F1-score) even under conditions of substantial interference and dataset variability. This research demonstrates that NIR spectroscopy-derived data can support genetic and physiological studies of drought-resistant seed varieties, facilitating a deeper understanding of drought resistance mechanisms and optimizing breeding strategies.

利用集成 ID-BOA-SVM 快速评估种子抗旱性的方法。
本研究调查了近红外光谱(NIR)在评估种子抗旱性中的应用,旨在提供一种适用于大规模初筛的快速高效的方法。利用近红外光谱分析与玉米种子抗旱性相关的四个关键因素(水分、糖、氨基酸含量和基因)。利用竞争性自适应重加权采样(CARS)技术识别了表明抗旱性相关分子的特征性近红外波段。此外,还开发了一种改进的离散贝叶斯优化支持向量机(ID-BOA-SVM)分类模型,以解决传统贝叶斯优化支持向量机(BOA-SVM)中与稀疏特征相关的问题。为了提高分类性能,构建了一个集成了随机森林 (RF)、ID-BOA-SVM、逻辑回归 (LR) 和梯度提升决策树 (GBDT) 分类器的堆叠模型,以确保稳健性并将过拟合风险降至最低。即使在干扰和数据集变化较大的情况下,该模型也能达到令人满意的识别准确率(准确率 94.28%、精确率 94%、召回率 94.61% 和 F1 分数 94.23%)。这项研究表明,近红外光谱数据可支持抗旱种子品种的遗传和生理研究,有助于深入了解抗旱机制和优化育种策略。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Analytical Methods
Analytical Methods CHEMISTRY, ANALYTICAL-FOOD SCIENCE & TECHNOLOGY
CiteScore
5.10
自引率
3.20%
发文量
569
审稿时长
1.8 months
期刊介绍: Early applied demonstrations of new analytical methods with clear societal impact
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