Mixed volumes of networks with binomial steady-states

IF 0.6 4区 数学 Q4 COMPUTER SCIENCE, THEORY & METHODS
Jane Ivy Coons , Maize Curiel , Elizabeth Gross
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引用次数: 0

Abstract

The steady-state degree of a chemical reaction network is the number of complex steady-states for generic rate constants and initial conditions. One way to bound the steady-state degree is through the mixed volume of an associated steady-state system. In this work, we show that for partitionable binomial chemical reaction systems, whose resulting steady-state systems are given by a set of binomials and a set of linear (not necessarily binomial) conservation equations, computing the mixed volume is equivalent to finding the volume of a single mixed cell that is the translate of a parallelotope. Additionally, we give a coloring condition on cycle networks to identify reaction systems with binomial steady-state ideals. We highlight both of these theorems using a class of networks referred to as species-overlapping networks and give a formula for the mixed volume of these networks.
具有二项稳定状态的网络混合体积
化学反应网络的稳态度是在一般速率常数和初始条件下的复合稳态的数量。约束稳态度的一种方法是通过相关稳态系统的混合体积。在这项工作中,我们证明了对于可分割的二项式化学反应系统(其稳态系统由一组二项式和一组线性(不一定是二项式)守恒方程给出),计算混合体积等同于求出单个混合池的体积,该混合池是平行梯度的平移。此外,我们还给出了循环网络的着色条件,以识别具有二项式稳态理想的反应系统。我们使用一类被称为物种重叠网络的网络来强调这两个定理,并给出了这些网络的混合体积公式。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Symbolic Computation
Journal of Symbolic Computation 工程技术-计算机:理论方法
CiteScore
2.10
自引率
14.30%
发文量
75
审稿时长
142 days
期刊介绍: An international journal, the Journal of Symbolic Computation, founded by Bruno Buchberger in 1985, is directed to mathematicians and computer scientists who have a particular interest in symbolic computation. The journal provides a forum for research in the algorithmic treatment of all types of symbolic objects: objects in formal languages (terms, formulas, programs); algebraic objects (elements in basic number domains, polynomials, residue classes, etc.); and geometrical objects. It is the explicit goal of the journal to promote the integration of symbolic computation by establishing one common avenue of communication for researchers working in the different subareas. It is also important that the algorithmic achievements of these areas should be made available to the human problem-solver in integrated software systems for symbolic computation. To help this integration, the journal publishes invited tutorial surveys as well as Applications Letters and System Descriptions.
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