Identification of autophagy gene family in potato and the role of StATG8a in salt and drought stress.

IF 5.4 2区 生物学 Q1 PLANT SCIENCES
Xi Zhu, Yasir Majeed, Ning Zhang, Wei Li, Huimin Duan, Xuemei Dou, Hui Jin, Zhuo Chen, Shu Chen, Jiannan Zhou, Qihua Wang, Jinghua Tang, Yu Zhang, Huaijun Si
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引用次数: 0

Abstract

Autophagy is a highly conserved method of recycling cytoplasm components in eukaryotes. It plays an important role in plant growth and development, as well as in response to biotic and abiotic stresses. Although autophagy-related genes (ATGs) have been identified in several crop species, their particular role in potato (Solanum tuberosum L.) remains unclear. Several transcription factors and signaling genes in the transgenic lines of the model plant Arabidopsis thaliana, such as AtTSPO, AtBES1, AtPIP2;7, AtCOST1 as well as AtATI1/2, ATG8f, GFP-ATG8F-HA, AtDSK2, AtNBR1, AtHKT1 play crucial functions under drought and salt stresses, respectively. In this study, a total of 29 putative StATGs from 15 different ATG subfamilies in the potato genome were identified. Their physicochemical properties, evolutionary connections, chromosomal distribution, gene duplication, protein-protein interaction network, conserved motifs, gene structure, interspecific collinearity relationship, and cis-regulatory elements were analyzed. The results of qRT-PCR detection of StATG expression showed that 29 StATGs were differentially expressed in potato's leaves, flowers, petiole, stem, stolon, tuber, and root. StATGs were dynamically modulated by salt and drought stresses and up-regulated under salt and drought conditions. Our results showed that the StATG8a localized in the cytoplasm and the nucleus. Potato cultivar "Atlantic" overexpressing or downregulating StATG8a were constructed. Based on physiological, biochemical, and photosynthesis parameters, potato lines overexpressing StATG8a exhibited 9 times higher drought and salt tolerance compared to non-transgenic plants. In contrast, the potato plants with knockdown expression showed a downtrend in drought and salt tolerance compared to non-transgenic potato lines. These results could provide new insights into the function of StATG8a in salt and drought response and its possible mechanisms.

马铃薯自噬基因家族的鉴定及 StATG8a 在盐胁迫和干旱胁迫中的作用
自噬是真核生物中一种高度保守的细胞质成分再循环方法。它在植物生长和发育以及应对生物和非生物胁迫方面发挥着重要作用。虽然自噬相关基因(ATGs)已在多个作物物种中被发现,但它们在马铃薯(Solanum tuberosum L.)中的特殊作用仍不清楚。在模式植物拟南芥(Arabidopsis thaliana)的转基因品系中,一些转录因子和信号转导基因,如 AtTSPO、AtBES1、AtPIP2;7、AtCOST1 以及 AtATI1/2、ATG8f、GFP-ATG8F-HA、AtDSK2、AtNBR1、AtHKT1 分别在干旱和盐胁迫下发挥关键作用。本研究共鉴定了马铃薯基因组中 15 个不同 ATG 亚家族中的 29 个推定 StATGs。分析了它们的理化性质、进化关系、染色体分布、基因重复、蛋白相互作用网络、保守基序、基因结构、种间共线性关系和顺式调控元件。对StATG表达的qRT-PCR检测结果表明,29个StATGs在马铃薯的叶、花、叶柄、茎、匍匐茎、块茎和根中有差异表达。StATGs受盐胁迫和干旱胁迫的动态调控,并在盐和干旱条件下上调。结果表明,StATG8a定位于细胞质和细胞核。构建了过表达或下调 StATG8a 的马铃薯栽培品种 "大西洋"。根据生理、生化和光合作用参数,与非转基因植株相比,过表达 StATG8a 的马铃薯品系的耐旱性和耐盐性高出 9 倍。相反,与非转基因马铃薯品系相比,基因敲除表达的马铃薯植株的耐旱性和耐盐性呈下降趋势。这些结果为了解 StATG8a 在盐和干旱响应中的功能及其可能的机制提供了新的视角。
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来源期刊
Physiologia plantarum
Physiologia plantarum 生物-植物科学
CiteScore
11.00
自引率
3.10%
发文量
224
审稿时长
3.9 months
期刊介绍: Physiologia Plantarum is an international journal committed to publishing the best full-length original research papers that advance our understanding of primary mechanisms of plant development, growth and productivity as well as plant interactions with the biotic and abiotic environment. All organisational levels of experimental plant biology – from molecular and cell biology, biochemistry and biophysics to ecophysiology and global change biology – fall within the scope of the journal. The content is distributed between 5 main subject areas supervised by Subject Editors specialised in the respective domain: (1) biochemistry and metabolism, (2) ecophysiology, stress and adaptation, (3) uptake, transport and assimilation, (4) development, growth and differentiation, (5) photobiology and photosynthesis.
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