Investigating the Causal Effects of Exercise-Induced Genes on Sarcopenia.

IF 5.6 2区 生物学
Li Wang, Song Zhang
{"title":"Investigating the Causal Effects of Exercise-Induced Genes on Sarcopenia.","authors":"Li Wang, Song Zhang","doi":"10.3390/ijms251910773","DOIUrl":null,"url":null,"abstract":"<p><p>Exercise is increasingly recognized as an effective strategy to counteract skeletal muscle aging and conditions such as sarcopenia. However, the specific exercise-induced genes responsible for these protective effects remain unclear. To address this, we conducted an eight-week aerobic exercise regimen on late-middle-aged mice and developed an integrated approach that combines mouse exercise-induced genes with human GWAS datasets to identify causal genes for sarcopenia. This approach led to significant improvements in the skeletal muscle phenotype of the mice and the identification of exercise-induced genes and miRNAs. By constructing a miRNA regulatory network enriched with transcription factors and GWAS signals related to muscle function and traits, we focused on 896 exercise-induced genes. Using human skeletal muscle <i>cis</i>-eQTLs as instrumental variables, 250 of these exercise-induced genes underwent two-sample Mendelian randomization analysis, identifying 40, 68, and 62 causal genes associated with sarcopenia and its clinical indicators-appendicular lean mass (ALM) and hand grip strength (HGS), respectively. Sensitivity analyses and cross-phenotype validation confirmed the robustness of our findings. Consistently across the three outcomes, <i>RXRA</i>, <i>MDM1</i>, <i>RBL2</i>, <i>KCNJ2</i>, and <i>ADHFE1</i> were identified as risk factors, while <i>NMB</i>, <i>TECPR2</i>, <i>MGAT3</i>, <i>ECHDC2</i>, and <i>GINM1</i> were identified as protective factors, all with potential as biomarkers for sarcopenia progression. Biological activity and disease association analyses suggested that exercise exerts its anti-sarcopenia effects primarily through the regulation of fatty acid oxidation. Based on available drug-gene interaction data, 21 of the causal genes are druggable, offering potential therapeutic targets. Our findings highlight key genes and molecular pathways potentially responsible for the anti-sarcopenia benefits of exercise, offering insights into future therapeutic strategies that could mimic the safe and mild protective effects of exercise on age-related skeletal muscle degeneration.</p>","PeriodicalId":14156,"journal":{"name":"International Journal of Molecular Sciences","volume":null,"pages":null},"PeriodicalIF":5.6000,"publicationDate":"2024-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11476887/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Molecular Sciences","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3390/ijms251910773","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Exercise is increasingly recognized as an effective strategy to counteract skeletal muscle aging and conditions such as sarcopenia. However, the specific exercise-induced genes responsible for these protective effects remain unclear. To address this, we conducted an eight-week aerobic exercise regimen on late-middle-aged mice and developed an integrated approach that combines mouse exercise-induced genes with human GWAS datasets to identify causal genes for sarcopenia. This approach led to significant improvements in the skeletal muscle phenotype of the mice and the identification of exercise-induced genes and miRNAs. By constructing a miRNA regulatory network enriched with transcription factors and GWAS signals related to muscle function and traits, we focused on 896 exercise-induced genes. Using human skeletal muscle cis-eQTLs as instrumental variables, 250 of these exercise-induced genes underwent two-sample Mendelian randomization analysis, identifying 40, 68, and 62 causal genes associated with sarcopenia and its clinical indicators-appendicular lean mass (ALM) and hand grip strength (HGS), respectively. Sensitivity analyses and cross-phenotype validation confirmed the robustness of our findings. Consistently across the three outcomes, RXRA, MDM1, RBL2, KCNJ2, and ADHFE1 were identified as risk factors, while NMB, TECPR2, MGAT3, ECHDC2, and GINM1 were identified as protective factors, all with potential as biomarkers for sarcopenia progression. Biological activity and disease association analyses suggested that exercise exerts its anti-sarcopenia effects primarily through the regulation of fatty acid oxidation. Based on available drug-gene interaction data, 21 of the causal genes are druggable, offering potential therapeutic targets. Our findings highlight key genes and molecular pathways potentially responsible for the anti-sarcopenia benefits of exercise, offering insights into future therapeutic strategies that could mimic the safe and mild protective effects of exercise on age-related skeletal muscle degeneration.

研究运动诱导基因对 "肌肉疏松症 "的因果效应。
人们越来越认识到,运动是对抗骨骼肌衰老和肌肉疏松症等疾病的有效策略。然而,导致这些保护作用的特定运动诱导基因仍不清楚。为了解决这个问题,我们对中晚年小鼠进行了为期八周的有氧运动,并开发了一种综合方法,将小鼠运动诱导基因与人类 GWAS 数据集结合起来,以确定肌肉疏松症的因果基因。这种方法显著改善了小鼠的骨骼肌表型,并确定了运动诱导基因和 miRNA。通过构建一个富含转录因子以及与肌肉功能和特征相关的GWAS信号的miRNA调控网络,我们重点研究了896个运动诱导基因。利用人体骨骼肌顺式-eQTLs 作为工具变量,对这些运动诱导基因中的 250 个基因进行了双样本孟德尔随机分析,发现了 40、68 和 62 个与肌肉疏松症及其临床指标--垂直瘦体重(ALM)和手握力(HGS)--相关的因果基因。敏感性分析和跨表型验证证实了我们研究结果的稳健性。在三种结果中,RXRA、MDM1、RBL2、KCNJ2 和 ADHFE1 被确定为风险因素,而 NMB、TECPR2、MGAT3、ECHDC2 和 GINM1 被确定为保护因素,它们都有可能成为肌少症进展的生物标记物。生物活性和疾病关联分析表明,运动主要通过调节脂肪酸氧化来发挥抗肌肉疏松症的作用。根据现有的药物-基因相互作用数据,其中 21 个因果基因可用于药物治疗,从而提供了潜在的治疗靶点。我们的研究结果突显了可能导致运动产生抗肌肉疏松益处的关键基因和分子通路,为未来的治疗策略提供了启示,这些策略可以模仿运动对与年龄相关的骨骼肌退化产生的安全、温和的保护作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
10.70%
发文量
13472
审稿时长
1.7 months
期刊介绍: The International Journal of Molecular Sciences (ISSN 1422-0067) provides an advanced forum for chemistry, molecular physics (chemical physics and physical chemistry) and molecular biology. It publishes research articles, reviews, communications and short notes. Our aim is to encourage scientists to publish their theoretical and experimental results in as much detail as possible. Therefore, there is no restriction on the length of the papers or the number of electronics supplementary files. For articles with computational results, the full experimental details must be provided so that the results can be reproduced. Electronic files regarding the full details of the calculation and experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material (including animated pictures, videos, interactive Excel sheets, software executables and others).
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信