A Latitudinal Gradient of Reference Genomes.

IF 4.5 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Ethan B Linck, Carlos Daniel Cadena
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引用次数: 0

Abstract

Global inequality rooted in legacies of colonialism and uneven development can lead to systematic biases in scientific knowledge. In ecology and evolutionary biology, findings, funding and research effort are disproportionately concentrated at high latitudes, while biological diversity is concentrated at low latitudes. This discrepancy may have a particular influence in fields like phylogeography, molecular ecology and conservation genetics, where the rise of genomics has increased the cost and technical expertise required to apply state-of-the-art methods. Here, we ask whether a fundamental biogeographic pattern-the latitudinal gradient of species richness in tetrapods-is reflected in the available reference genomes, an important data resource for various applications of molecular tools for biodiversity research and conservation. We also ask whether sequencing approaches differ between the Global South and Global North, reviewing the last 5 years of conservation genetics research in four leading journals. We find that extant reference genomes are scarce relative to species richness at low latitudes and that reduced representation and whole-genome sequencing are disproportionately applied to taxa in the Global North. We conclude with recommendations to close this gap and improve international collaborations in biodiversity genomics.

参考基因组的纬度梯度。
殖民主义和不平衡发展遗留下来的全球不平等会导致科学知识的系统性偏差。在生态学和进化生物学领域,研究成果、资金和研究力量不成比例地集中在高纬度地区,而生物多样性则集中在低纬度地区。这种差异可能对系统地理学、分子生态学和保护遗传学等领域产生特殊影响,因为基因组学的兴起增加了应用最先进方法所需的成本和专业技术。在这里,我们要问的是,一个基本的生物地理格局--四足动物物种丰富度的纬度梯度--是否反映在现有的参考基因组中,而参考基因组是将分子工具应用于生物多样性研究和保护的重要数据资源。我们还询问了全球南方和全球北方在测序方法上是否存在差异,并回顾了过去 5 年中四种主要期刊上的保护遗传学研究。我们发现,相对于低纬度地区的物种丰富度而言,现存的参考基因组非常稀少,而降低代表性和全基因组测序则不成比例地应用于全球北方的类群。最后,我们提出了缩小这一差距和加强生物多样性基因组学国际合作的建议。
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来源期刊
Molecular Ecology
Molecular Ecology 生物-进化生物学
CiteScore
8.40
自引率
10.20%
发文量
472
审稿时长
1 months
期刊介绍: Molecular Ecology publishes papers that utilize molecular genetic techniques to address consequential questions in ecology, evolution, behaviour and conservation. Studies may employ neutral markers for inference about ecological and evolutionary processes or examine ecologically important genes and their products directly. We discourage papers that are primarily descriptive and are relevant only to the taxon being studied. Papers reporting on molecular marker development, molecular diagnostics, barcoding, or DNA taxonomy, or technical methods should be re-directed to our sister journal, Molecular Ecology Resources. Likewise, papers with a strongly applied focus should be submitted to Evolutionary Applications. Research areas of interest to Molecular Ecology include: * population structure and phylogeography * reproductive strategies * relatedness and kin selection * sex allocation * population genetic theory * analytical methods development * conservation genetics * speciation genetics * microbial biodiversity * evolutionary dynamics of QTLs * ecological interactions * molecular adaptation and environmental genomics * impact of genetically modified organisms
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