Chemically Transferable Electronic Coarse Graining for Polythiophenes.

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL
Journal of Chemical Theory and Computation Pub Date : 2024-10-22 Epub Date: 2024-10-07 DOI:10.1021/acs.jctc.4c00804
Zheng Yu, Nicholas E Jackson
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引用次数: 0

Abstract

Recent advances in machine-learning-based electronic coarse graining (ECG) methods have demonstrated the potential to enable electronic predictions in soft materials at mesoscopic length scales. However, previous ECG models have yet to confront the issue of chemical transferability. In this study, we develop chemically transferable ECG models for polythiophenes using graph neural networks. Our models are trained on a data set that samples over the conformational space of random polythiophene sequences generated with 15 different monomer chemistries and three different degrees of polymerization. We systematically explore the impact of coarse-grained representation on ECG accuracy, highlighting the significance of preserving the C-β coordinates in thiophene. We also find that integrating unique polymer sequences into training enhances the model performance more efficiently than augmenting conformational sampling for sequences already in the training data set. Moreover, our ECG models, developed initially for one property and one level of quantum chemical theory, can be efficiently transferred to related properties and higher levels of theory with minimal additional data. The chemically transferable ECG model introduced in this work will serve as a foundation model for new classes of chemically transferable ECG predictions across chemical space.

Abstract Image

聚噻吩的化学可转移电子粗粒化。
基于机器学习的电子粗粒化(ECG)方法的最新进展表明,它具有在介观长度尺度上对软材料进行电子预测的潜力。然而,以往的 ECG 模型尚未解决化学可转移性问题。在本研究中,我们利用图神经网络为聚噻吩开发了可化学转移的 ECG 模型。我们的模型是在一个数据集上训练的,该数据集采样了由 15 种不同单体化学成分和 3 种不同聚合度生成的随机聚噻吩序列的构象空间。我们系统地探讨了粗粒度表示对心电图准确性的影响,强调了在噻吩中保留 C-β 坐标的重要性。我们还发现,将独特的聚合物序列整合到训练中比对训练数据集中已有的序列进行构象采样更有效地提高了模型性能。此外,我们的 ECG 模型最初是针对一种性质和一种量子化学理论水平开发的,只需极少的额外数据,就能有效地转移到相关性质和更高层次的理论中。这项工作中引入的可化学转移的心电图模型将作为一个基础模型,用于跨化学空间的新类别可化学转移的心电图预测。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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