AI-assisted models to predict chemotherapy drugs modified with C60 fullerene derivatives.

IF 2.6 4区 材料科学 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY
Beilstein Journal of Nanotechnology Pub Date : 2024-09-19 eCollection Date: 2024-01-01 DOI:10.3762/bjnano.15.95
Jonathan-Siu-Loong Robles-Hernández, Dora Iliana Medina, Katerin Aguirre-Hurtado, Marlene Bosquez, Roberto Salcedo, Alan Miralrio
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引用次数: 0

Abstract

Employing quantitative structure-activity relationship (QSAR)/ quantitative structure-property relationship (QSPR) models, this study explores the application of fullerene derivatives as nanocarriers for breast cancer chemotherapy drugs. Isolated drugs and two drug-fullerene complexes (i.e., drug-pristine C60 fullerene and drug-carboxyfullerene C60-COOH) were investigated with the protein CXCR7 as the molecular docking target. The research involved over 30 drugs and employed Pearson's hard-soft acid-base theory and common QSAR/QSPR descriptors to build predictive models for the docking scores. Energetic descriptors were computed using quantum chemistry at the density functional-based tight binding DFTB3 level. The results indicate that drug-fullerene complexes interact more with CXCR7 than isolated drugs. Specific binding sites were identified, with varying locations for each drug complex. Predictive models, developed using multiple linear regression and IBM Watson artificial intelligence (AI), achieved mean absolute percentage errors below 12%, driven by AI-identified key variables. The predictive models included mainly quantitative descriptors collected from datasets as well as computed ones. In addition, a water-soluble fullerene was used to compare results obtained by DFTB3 with a conventional density functional theory approach. These findings promise to enhance breast cancer chemotherapy by leveraging fullerene-based drug nanocarriers.

用人工智能辅助模型预测用 C60 富勒烯衍生物修饰的化疗药物。
本研究采用定量结构-活性关系(QSAR)/定量结构-性能关系(QSPR)模型,探讨了富勒烯衍生物作为乳腺癌化疗药物纳米载体的应用。以蛋白质 CXCR7 为分子对接目标,研究了独立药物和两种药物-富勒烯复合物(即药物-原始 C60 富勒烯和药物-羧基富勒烯 C60-COOH)。研究涉及 30 多种药物,并采用皮尔逊软硬酸碱理论和常见的 QSAR/QSPR 描述因子来建立对接得分预测模型。在基于密度泛函的紧密结合 DFTB3 水平上,利用量子化学计算了能量描述符。结果表明,药物-富勒烯复合物与 CXCR7 的相互作用比孤立药物更强。确定了特定的结合位点,每个药物复合物的结合位点各不相同。利用多元线性回归和 IBM Watson 人工智能(AI)开发的预测模型,在人工智能识别的关键变量的驱动下,平均绝对百分比误差低于 12%。预测模型主要包括从数据集收集的定量描述符和计算得出的描述符。此外,还使用了一种水溶性富勒烯来比较 DFTB3 与传统密度泛函理论方法得出的结果。这些发现有望利用富勒烯基药物纳米载体提高乳腺癌化疗效果。
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来源期刊
Beilstein Journal of Nanotechnology
Beilstein Journal of Nanotechnology NANOSCIENCE & NANOTECHNOLOGY-MATERIALS SCIENCE, MULTIDISCIPLINARY
CiteScore
5.70
自引率
3.20%
发文量
109
审稿时长
2 months
期刊介绍: The Beilstein Journal of Nanotechnology is an international, peer-reviewed, Open Access journal. It provides a unique platform for rapid publication without any charges (free for author and reader) – Platinum Open Access. The content is freely accessible 365 days a year to any user worldwide. Articles are available online immediately upon publication and are publicly archived in all major repositories. In addition, it provides a platform for publishing thematic issues (theme-based collections of articles) on topical issues in nanoscience and nanotechnology. The journal is published and completely funded by the Beilstein-Institut, a non-profit foundation located in Frankfurt am Main, Germany. The editor-in-chief is Professor Thomas Schimmel – Karlsruhe Institute of Technology. He is supported by more than 20 associate editors who are responsible for a particular subject area within the scope of the journal.
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