Resurrected microorganisms: a plethora of resting bacteria underway for human interaction.

IF 3.5 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Arshia Amin, Inam Ullah Khan, Mehroze Amin, Maliha Fatima, Wasim Sajjad, Tawaf Ali Shah, Turki M Dawoud, Gezahign Fentahun Wondmie
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引用次数: 0

Abstract

Glaciers, which form due to the accumulation of snow, play a crucial role in providing freshwater resources, supporting river systems, and maintaining ecosystem stability. Pakistan is habitat to over 5000 glaciers, primarily located in the Hindukash, Himalaya, and Karakoram mountain ranges. Understanding the microbial communities thriving in these extreme environments becomes of utmost importance. These glaciers offer a unique perspective on extremophile adaptation, as they harbor microorganisms that are capable of surviving and thriving under harsh conditions. Glacial melting poses a significant threat to ancient microbiomes, potentially leading to the resurgence of epidemics and exposure of life to paleomicrobiota. Mostly glacial microbiome is evenly distributed and shows similar diversity. With the threat of resurrection of ages old microbiome and its incorporation into the waters have raised a major concern for revival of epidemics and exposure of life with paleanmicrobiota again. This has led the scientist to deeply observe the bacterial flora embedded in the cryonite holes of glaciers. This study aims to investigate the bacterial diversity within various glaciers of Pakistan using metagenomic techniques. Kamri, Burzil, Siachin, Baltoro, Shigar Basin, Biafo and Panama Glaciers designated from G1 to G7 respectively were chosen from Pakistan. Through rigorous physicochemical analyses, distinct characteristics among glaciers are revealed, including variations in temperature, depth, electrical conductivity, pH levels, and nutrient concentrations. The exploration of alpha diversity, employing metrics such as Chao1, Shannon, Simpson, and Inverse Simpson indices, offers valuable insights into the richness, evenness, and dominance of species within different samples. Beta diversity was calculated by using R software. The vegan package was used for NMSD, cluster and PCoA analysis based on Bray-Curtis distance. PCA analysis was done by using prcomp package from R software. Based on OTU abundance and environmental factor data, DCA analysis was done to determine the linear model from the gradient value (RDA) and the unimodal model (CCA). results were compiled by drawing cluster dendrogram which predicts the patterns of similarity and dissimilarity between different samples. Notably, phyla Proteobacteria emerge as the dominant phylum, accompanied by Actinobacteria, Firmicutes, and Bacteroidetes. The dendrogram shows five clusters, with close similarity between G1 and G4, glacier samples G3 and G8, and G2 and G7. Seasonal variations in glacier physicochemical properties were also observed, with summer samples having shallower depths, lower temperatures, and slightly acidic pH. In contrast, winter samples have higher electrical conductivity and sulfur content. Ultimately, this research provides a foundational framework for comprehending glacier ecosystems, their resident microbial communities, and their broader ecological significance. The study highlights the potential public health risks linked to the release of ancient microorganisms due to climate change, emphasizing the need for comprehensive monitoring and research to mitigate potential public health threats.

复活的微生物:大量静止的细菌正在与人类互动。
冰川因积雪而形成,在提供淡水资源、支持河流系统和维持生态系统稳定方面发挥着至关重要的作用。巴基斯坦拥有 5000 多座冰川,主要分布在兴都卡什山脉、喜马拉雅山脉和喀喇昆仑山脉。了解在这些极端环境中繁衍生息的微生物群落变得至关重要。这些冰川蕴藏着能够在恶劣条件下生存和繁衍的微生物,为研究嗜极微生物的适应性提供了一个独特的视角。冰川融化对古微生物群构成重大威胁,有可能导致流行病重新出现,并使生命暴露在古微生物群中。冰川微生物群大多分布均匀,显示出相似的多样性。随着古老微生物群的复活及其融入水体的威胁,人们对流行病的复苏和生命再次暴露于古微生物群中产生了极大的担忧。这促使科学家深入观察冰川冰晶石洞中的细菌群。这项研究旨在利用元基因组技术调查巴基斯坦不同冰川中的细菌多样性。研究选取了巴基斯坦的卡姆里冰川(Kamri)、布尔齐尔冰川(Burzil)、锡亚琴冰川(Siachin)、巴尔托罗冰川(Baltoro)、希格尔盆地冰川(Shigar Basin)、比亚佛冰川(Biafo)和巴拿马冰川(Panama Glaciers),分别命名为 G1 至 G7。通过严格的物理化学分析,揭示了冰川之间的不同特征,包括温度、深度、电导率、pH 值和营养浓度的变化。利用 Chao1、Shannon、Simpson 和 Inverse Simpson 指数等指标对阿尔法多样性进行的探索,为了解不同样本中物种的丰富度、均匀度和优势度提供了宝贵的信息。贝塔多样性使用 R 软件计算。vegan 软件包用于基于布雷-柯蒂斯距离的 NMSD、聚类和 PCoA 分析。使用 R 软件中的 prcomp 软件包进行 PCA 分析。根据 OTU 丰度和环境因子数据,进行了 DCA 分析,以确定梯度值线性模型(RDA)和单模态模型(CCA)。值得注意的是,变形菌门(Proteobacteria)是最主要的门类,其次是放线菌门(Actinobacteria)、真菌门(Firmicutes)和类杆菌门(Bacteroidetes)。树枝图显示了五个聚类,G1 和 G4、冰川样本 G3 和 G8 以及 G2 和 G7 之间的相似性很高。冰川理化性质也存在季节性变化,夏季样本的深度较浅,温度较低,pH 值呈弱酸性。相比之下,冬季样本的电导率和硫含量较高。最终,这项研究为理解冰川生态系统、其常驻微生物群落及其更广泛的生态意义提供了一个基础框架。该研究强调了气候变化导致的古老微生物释放所带来的潜在公共健康风险,强调了进行全面监测和研究以减轻潜在公共健康威胁的必要性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
AMB Express
AMB Express BIOTECHNOLOGY & APPLIED MICROBIOLOGY-
CiteScore
7.20
自引率
2.70%
发文量
141
审稿时长
13 weeks
期刊介绍: AMB Express is a high quality journal that brings together research in the area of Applied and Industrial Microbiology with a particular interest in ''White Biotechnology'' and ''Red Biotechnology''. The emphasis is on processes employing microorganisms, eukaryotic cell cultures or enzymes for the biosynthesis, transformation and degradation of compounds. This includes fine and bulk chemicals, polymeric compounds and enzymes or other proteins. Downstream processes are also considered. Integrated processes combining biochemical and chemical processes are also published.
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