Antioxidant activity of NSAIDs-Se derivatives: predictive QSAR-machine learning models†

IF 2.5 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY
Zhihui Fu, Amphawan Wiriyarattanakul, Wanting Xie, Pattamon Jantorn, Borwornlak Toopradab, Liyi Shi, Thanyada Rungrotmongkol and Phornphimon Maitarad
{"title":"Antioxidant activity of NSAIDs-Se derivatives: predictive QSAR-machine learning models†","authors":"Zhihui Fu, Amphawan Wiriyarattanakul, Wanting Xie, Pattamon Jantorn, Borwornlak Toopradab, Liyi Shi, Thanyada Rungrotmongkol and Phornphimon Maitarad","doi":"10.1039/D4NJ03216K","DOIUrl":null,"url":null,"abstract":"<p >The study employed the random forest (RF) and artificial neural network (ANN) methods based on the quantitative structure–activity relationship (QSAR) techniques to analyze NSAIDs-Se derivatives and their antioxidant abilities. The best predictive models by the RF method yielded a coefficient of determination (<em>R</em><small><sup>2</sup></small>) value of 0.868 for the training set, and the root mean square error (RMSE) of the test set was only 0.053. For the QSAR-ANN, the best predictive models resulted in an <em>R</em><small><sup>2</sup></small> value of 0.935, and the RMSE of the test set was 0.068. Based on the best models, the steric, electrostatic, and enthalpy descriptors are found to be related to antioxidant prediction. Thus, to extend the predictive ability of the obtained QSAR-ML models, an external set was collected from a later publication of NSAIDs-Se derivatives with experimental antioxidant abilities. The efficacy of two QSAR models in forecasting the antioxidant abilities of an external set of NSAIDs-Se derivatives was evaluated. The QSAR with machine learning models demonstrated high efficiency in predicting the antioxidant abilities of the external NSAIDs-Se set with an RMSE of the external set in the range of 0.074–0.087. Therefore, the results suggest that fine-tuning machine learning-based QSAR studies can aid in the design of novel NSAIDs-Se derivatives with highly efficient antioxidant prediction.</p>","PeriodicalId":95,"journal":{"name":"New Journal of Chemistry","volume":" 37","pages":" 16359-16368"},"PeriodicalIF":2.5000,"publicationDate":"2024-08-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"New Journal of Chemistry","FirstCategoryId":"92","ListUrlMain":"https://pubs.rsc.org/en/content/articlelanding/2024/nj/d4nj03216k","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

Abstract

The study employed the random forest (RF) and artificial neural network (ANN) methods based on the quantitative structure–activity relationship (QSAR) techniques to analyze NSAIDs-Se derivatives and their antioxidant abilities. The best predictive models by the RF method yielded a coefficient of determination (R2) value of 0.868 for the training set, and the root mean square error (RMSE) of the test set was only 0.053. For the QSAR-ANN, the best predictive models resulted in an R2 value of 0.935, and the RMSE of the test set was 0.068. Based on the best models, the steric, electrostatic, and enthalpy descriptors are found to be related to antioxidant prediction. Thus, to extend the predictive ability of the obtained QSAR-ML models, an external set was collected from a later publication of NSAIDs-Se derivatives with experimental antioxidant abilities. The efficacy of two QSAR models in forecasting the antioxidant abilities of an external set of NSAIDs-Se derivatives was evaluated. The QSAR with machine learning models demonstrated high efficiency in predicting the antioxidant abilities of the external NSAIDs-Se set with an RMSE of the external set in the range of 0.074–0.087. Therefore, the results suggest that fine-tuning machine learning-based QSAR studies can aid in the design of novel NSAIDs-Se derivatives with highly efficient antioxidant prediction.

Abstract Image

非甾体抗炎药-Se 衍生物的抗氧化活性:预测性 QSAR-机器学习模型†。
研究采用了基于定量结构-活性关系(QSAR)技术的随机森林(RF)和人工神经网络(ANN)方法来分析非甾体抗炎药-Se衍生物及其抗氧化能力。RF方法得出的最佳预测模型的训练集决定系数(R2)为0.868,测试集的均方根误差(RMSE)仅为0.053。对于 QSAR-ANN,最佳预测模型的 R2 值为 0.935,测试集的均方根误差为 0.068。根据最佳模型,发现立体、静电和焓描述符与抗氧化剂预测有关。因此,为了扩展所获得的 QSAR-ML 模型的预测能力,我们从后来发表的具有实验抗氧化能力的非甾体抗炎药-Se 衍生物中收集了一个外部集。评估了两个 QSAR 模型在预测外部非甾体抗炎药-Se 衍生物抗氧化能力方面的功效。采用机器学习模型的 QSAR 在预测外部 NSAIDs-Se 衍生物集的抗氧化能力方面表现出很高的效率,外部集的 RMSE 在 0.074-0.087 之间。因此,研究结果表明,基于机器学习的 QSAR 微调研究有助于设计新型非甾体抗炎药-Se 衍生物,并进行高效的抗氧化预测。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
New Journal of Chemistry
New Journal of Chemistry 化学-化学综合
CiteScore
5.30
自引率
6.10%
发文量
1832
审稿时长
2 months
期刊介绍: A journal for new directions in chemistry
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信