Complete mitochondrial genome of Plecialongiforceps Duda, 1933 (Diptera, Bibionidae) and its implications for a phylogeny of the family Bibionidae.

IF 1.3 3区 生物学 Q2 ZOOLOGY
ZooKeys Pub Date : 2024-09-12 eCollection Date: 2024-01-01 DOI:10.3897/zookeys.1212.117845
Seunghun Jung, Sangil Kim, Seunggwan Shin
{"title":"Complete mitochondrial genome of <i>Plecialongiforceps</i> Duda, 1933 (Diptera, Bibionidae) and its implications for a phylogeny of the family Bibionidae.","authors":"Seunghun Jung, Sangil Kim, Seunggwan Shin","doi":"10.3897/zookeys.1212.117845","DOIUrl":null,"url":null,"abstract":"<p><p>Over the past decade, the prevalence of mass outbreaks involving non-native insects has sparked concerns about their potential negative impact on human inhabited areas and local environments. <i>Plecialongiforceps</i> Duda, 1933 (Diptera, Bibionidae) was recently recognized as an invasive pest in South Korea, causing public nuisance through mass outbreaks in the Seoul Metropolitan Area during early summer. In this study, we present the first complete mitochondrial genome of <i>Plecialongiforceps</i>, generated from the PacBio HiFi long-read sequencing data. Notably, the length of the circular genome is found to be larger than any annotated reference sequences of mitochondrial genomes for the infraorder Bibionomorpha, which is attributable to an unusually long A+T rich control region. We conducted a phylogenetic analysis of Bibionomorpha, focusing specifically on the family Bibionidae, using nearly all available mitochondrial genome data to elucidate relationships among genera within Bibionidae. Our phylogeny of Bibionomorpha recovered a strong monophyly of the family Bibionidae and its three subfamilies: Bibioninae (<i>Bibio</i> + <i>Dilophus</i>), Hesperininae (<i>Hesperinus</i> + <i>Penthetria</i>), and Pleciinae (<i>Plecia</i>), corroborating the recently proposed taxonomic classification system of Bibionidae. Furthermore, we discuss evolutionary trends within Bibionidae based on our well-supported higher relationships of the superfamily Bibionoidea.</p>","PeriodicalId":24051,"journal":{"name":"ZooKeys","volume":null,"pages":null},"PeriodicalIF":1.3000,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11413505/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"ZooKeys","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3897/zookeys.1212.117845","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"ZOOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Over the past decade, the prevalence of mass outbreaks involving non-native insects has sparked concerns about their potential negative impact on human inhabited areas and local environments. Plecialongiforceps Duda, 1933 (Diptera, Bibionidae) was recently recognized as an invasive pest in South Korea, causing public nuisance through mass outbreaks in the Seoul Metropolitan Area during early summer. In this study, we present the first complete mitochondrial genome of Plecialongiforceps, generated from the PacBio HiFi long-read sequencing data. Notably, the length of the circular genome is found to be larger than any annotated reference sequences of mitochondrial genomes for the infraorder Bibionomorpha, which is attributable to an unusually long A+T rich control region. We conducted a phylogenetic analysis of Bibionomorpha, focusing specifically on the family Bibionidae, using nearly all available mitochondrial genome data to elucidate relationships among genera within Bibionidae. Our phylogeny of Bibionomorpha recovered a strong monophyly of the family Bibionidae and its three subfamilies: Bibioninae (Bibio + Dilophus), Hesperininae (Hesperinus + Penthetria), and Pleciinae (Plecia), corroborating the recently proposed taxonomic classification system of Bibionidae. Furthermore, we discuss evolutionary trends within Bibionidae based on our well-supported higher relationships of the superfamily Bibionoidea.

Plecialongiforceps Duda, 1933 (Diptera, Bibionidae) 的完整线粒体基因组及其对 Bibionidae 科系统发育的影响。
在过去的十年中,非本地昆虫大规模爆发的盛行引发了人们对其对人类居住区和当地环境潜在负面影响的担忧。最近,Plecialongiforceps Duda, 1933(双翅目,Bibionidae)被认为是韩国的入侵害虫,初夏时节在首尔大都会区大规模爆发,造成公害。在这项研究中,我们首次从 PacBio HiFi 长序列测序数据中获得了 Plecialongiforceps 的完整线粒体基因组。值得注意的是,环状基因组的长度大于任何注释的 Bibionomorpha 下目线粒体基因组参考序列,这归因于一个异常长的富含 A+T 的控制区。我们利用几乎所有可用的线粒体基因组数据,对 Bibionomorpha 进行了系统进化分析,尤其侧重于 Bibionidae 科,以阐明 Bibionidae 科内各属之间的关系。我们的 Bibionomorpha 系统发育发现 Bibionidae 科及其三个亚科具有很强的单系性:Bibioninae(Bibio + Dilophus)、Hesperinae(Hesperinus + Penthetria)和Pleciinae(Plecia),证实了最近提出的Bibionidae分类系统。此外,我们还讨论了基于 Bibionoidea 超科高等关系的 Bibionidae 的进化趋势。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
ZooKeys
ZooKeys 生物-动物学
CiteScore
2.70
自引率
15.40%
发文量
400
审稿时长
3 months
期刊介绍: ZooKeys is a peer-reviewed, open-access, online and print, rapidly produced journal launched to support free exchange of ideas and information in systematic zoology, phylogeny and biogeography. All papers can be freely copied, downloaded, printed and distributed at no charge. Authors and readers are thus encouraged to post the pdf files of published papers on homepages or elsewhere to expedite distribution. There is no charge for color.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信