Predicting overall survival in anaplastic thyroid cancer using machine learning approaches.

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Arnavaz Hajizadeh Barfejani, Mohammadreza Rostami, Mohammad Rahimi, Hossein Sabori Far, Shahab Gholizadeh, Morteza Behjat, Aidin Tarokhian
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Abstract

Purpose: Anaplastic thyroid carcinoma (ATC) is a highly aggressive and lethal thyroid cancer subtype with a poor prognosis. Recent advancements in machine learning (ML) have the potential to improve survival predictions. This study aimed to develop and validate ML models using the SEER database to predict 3-month, 6-month, and 12-month (overall survival) OS in ATC patients.

Methods: Clinical and demographic data for patients with ATC from the SEER database (2004-2015) were utilized. Five ML algorithms-AdaBoost, support vector machines, gradient boosting classifiers, random forests, and naive Bayes-were evaluated. The data were split into training and testing sets (7:3 ratio), and the models were tuned using fivefold cross-validation. Model performance was assessed using the concordance index (C-index) and Brier score, with 95% confidence intervals reported.

Results: The gradient boosting model achieved the greatest performance for 3-month survival (C-index: 0.8197, 95% CI 0.7682-0.8689; Brier score: 0.1802), and the AdaBoost model achieved the greatest performance in 6-month survival (C-index: 0.8473, 95% CI 0.7979-0.8933; Brier score: 0.1775). The SVC model showed superior performance for 12-month survival (C-index: 0.8347, 95% CI 0.7866-0.8816; Brier score: 0.1476). Using SHAP with a gradient boosting model, the top five features affecting 6-month OS were identified: surgery, the presence of stage IVC, radiation, chemotherapy, and tumor size. Treatment improved survival, while higher stages reduced survival, with smaller tumors generally linked to better outcomes.

Conclusion: ML algorithms can accurately predict short-term survival in ATC patients. These models can potentially guide clinical decision-making and individualized treatment strategies.

利用机器学习方法预测无性甲状腺癌的总生存期
目的:甲状腺无节细胞癌(ATC)是一种侵袭性强、致死率高、预后不良的甲状腺癌亚型。机器学习(ML)的最新进展有可能改善生存预测。本研究旨在利用 SEER 数据库开发和验证 ML 模型,以预测 ATC 患者 3 个月、6 个月和 12 个月(总生存期)的 OS:研究利用了 SEER 数据库(2004-2015 年)中 ATC 患者的临床和人口统计学数据。评估了五种 ML 算法--AdaBoost、支持向量机、梯度提升分类器、随机森林和天真贝叶斯。数据被分成训练集和测试集(比例为 7:3),并使用五倍交叉验证对模型进行调整。使用一致性指数(C-index)和布赖尔评分评估模型性能,并报告 95% 的置信区间:梯度提升模型在 3 个月存活率方面表现最佳(C-index:0.8197,95% CI 0.7682-0.8689; Brier score:0.1802),AdaBoost 模型在 6 个月存活率方面表现最佳(C-index:0.8473,95% CI 0.7979-0.8933; Brier score:0.1775)。SVC 模型在 12 个月生存率方面表现更优(C 指数:0.8347,95% CI 0.7866-0.8816; Brier 评分:0.1476)。利用 SHAP 和梯度提升模型,确定了影响 6 个月生存率的五大特征:手术、IVC 期、放疗、化疗和肿瘤大小。治疗提高了生存率,而较高的分期则降低了生存率,较小的肿瘤通常与较好的预后有关:结论:ML 算法可以准确预测 ATC 患者的短期生存率。这些模型可为临床决策和个体化治疗策略提供潜在指导。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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