Blake D. Fonda, Masato Kato, Yang Li, Dylan T. Murray
{"title":"Cryo‐EM and solid state NMR together provide a more comprehensive structural investigation of protein fibrils","authors":"Blake D. Fonda, Masato Kato, Yang Li, Dylan T. Murray","doi":"10.1002/pro.5168","DOIUrl":null,"url":null,"abstract":"The tropomyosin 1 isoform I/C C‐terminal domain (Tm1‐LC) fibril structure is studied jointly with cryogenic electron microscopy (cryo‐EM) and solid state nuclear magnetic resonance (NMR). This study demonstrates the complementary nature of these two structural biology techniques. Chemical shift assignments from solid state NMR are used to determine the secondary structure at the level of individual amino acids, which is faithfully seen in cryo‐EM reconstructions. Additionally, solid state NMR demonstrates that the region not observed in the reconstructed cryo‐EM density is primarily in a highly mobile random coil conformation rather than adopting multiple rigid conformations. Overall, this study illustrates the benefit of investigations combining cryo‐EM and solid state NMR to investigate protein fibril structure.","PeriodicalId":20761,"journal":{"name":"Protein Science","volume":"66 1","pages":""},"PeriodicalIF":4.5000,"publicationDate":"2024-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Protein Science","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1002/pro.5168","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
The tropomyosin 1 isoform I/C C‐terminal domain (Tm1‐LC) fibril structure is studied jointly with cryogenic electron microscopy (cryo‐EM) and solid state nuclear magnetic resonance (NMR). This study demonstrates the complementary nature of these two structural biology techniques. Chemical shift assignments from solid state NMR are used to determine the secondary structure at the level of individual amino acids, which is faithfully seen in cryo‐EM reconstructions. Additionally, solid state NMR demonstrates that the region not observed in the reconstructed cryo‐EM density is primarily in a highly mobile random coil conformation rather than adopting multiple rigid conformations. Overall, this study illustrates the benefit of investigations combining cryo‐EM and solid state NMR to investigate protein fibril structure.
期刊介绍:
Protein Science, the flagship journal of The Protein Society, is a publication that focuses on advancing fundamental knowledge in the field of protein molecules. The journal welcomes original reports and review articles that contribute to our understanding of protein function, structure, folding, design, and evolution.
Additionally, Protein Science encourages papers that explore the applications of protein science in various areas such as therapeutics, protein-based biomaterials, bionanotechnology, synthetic biology, and bioelectronics.
The journal accepts manuscript submissions in any suitable format for review, with the requirement of converting the manuscript to journal-style format only upon acceptance for publication.
Protein Science is indexed and abstracted in numerous databases, including the Agricultural & Environmental Science Database (ProQuest), Biological Science Database (ProQuest), CAS: Chemical Abstracts Service (ACS), Embase (Elsevier), Health & Medical Collection (ProQuest), Health Research Premium Collection (ProQuest), Materials Science & Engineering Database (ProQuest), MEDLINE/PubMed (NLM), Natural Science Collection (ProQuest), and SciTech Premium Collection (ProQuest).