{"title":"De Novo Transcriptome Assembly and Characterization for Bergenia crassifolia (L.)","authors":"Shiping Cheng, Guomiao Zhao","doi":"10.1007/s11105-024-01483-0","DOIUrl":null,"url":null,"abstract":"<p><i>Bergenia crassifolia</i> (L.) Fritsch, of the family Bergenia Moench, has a broad distribution in China and has been used in Chinese medicine and Chinese gardens extensively. Approximately 544 million high-quality sequence reads and 75,115 unigenes were obtained, among which 40,102 (53.39%) were annotated in NR, 27,769 (36.97%) were annotated in Swiss-Prot, 27,266 (36.30%) were annotated in GO, 12,644 (16.83%) were annotated in KEGG, and 37,808 (50.33%) were annotated in eggNOG database. A total of 1,495 DEUs were obtained, and the expression patterns of these DEUs were gathered into eight categories, and the functions of genes in each categories were analyzed in KEGG pathway. The results may meet the needs for carbon–nitrogen metabolism, adaptation to climate change, and accumulation of secondary metabolites’ studies in <i>B</i>. <i>crassifolia</i> and its relatives.</p>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2024-08-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s11105-024-01483-0","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
Bergenia crassifolia (L.) Fritsch, of the family Bergenia Moench, has a broad distribution in China and has been used in Chinese medicine and Chinese gardens extensively. Approximately 544 million high-quality sequence reads and 75,115 unigenes were obtained, among which 40,102 (53.39%) were annotated in NR, 27,769 (36.97%) were annotated in Swiss-Prot, 27,266 (36.30%) were annotated in GO, 12,644 (16.83%) were annotated in KEGG, and 37,808 (50.33%) were annotated in eggNOG database. A total of 1,495 DEUs were obtained, and the expression patterns of these DEUs were gathered into eight categories, and the functions of genes in each categories were analyzed in KEGG pathway. The results may meet the needs for carbon–nitrogen metabolism, adaptation to climate change, and accumulation of secondary metabolites’ studies in B. crassifolia and its relatives.
期刊介绍：
Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance.
Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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