Screening and toxicity evaluation of natural compounds as adenosine 2a and 2b receptor ligands: insights from molecular docking, dynamics, and ADMET analysis.

IF 2.1 4区 医学 Q3 CHEMISTRY, MULTIDISCIPLINARY
Drug and Chemical Toxicology Pub Date : 2025-05-01 Epub Date: 2024-08-20 DOI:10.1080/01480545.2024.2389982
Fuat Karakuş, Mehmet Abdullah Alagöz, Burak Kuzu
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引用次数: 0

Abstract

Recent studies suggest that immunological and inflammatory responses in cardiovascular disorders, such as hypertension, myocardial infarction, ischemia injury, heart failure, arrhythmias, and atherosclerosis, may be affected by changes in the adenosine system. Pharmacological modulation of adenosine occurs through its receptor subtypes. In numerous preclinical studies, the activation of adenosine receptor 2A (A2AR) or the blockade of adenosine receptor 2B (A2BR) has shown promising results against cardiovascular diseases. This in silico study aimed to identify potential natural compounds that can activate A2AR or block A2BR without causing toxicity. Natural compounds were screened using COlleCtion of Open Natural ProdUcTs (COCONUT) or Natural Product Activity and Species Source Database (NPASS) databases to find agonists for A2AR or an antagonists/inverse agonists for A2BR. These compounds were then pre-filtered based on their toxicity profiles. The remaining compounds were subjected to molecular docking against A2AR and A2BR followed by molecular dynamics simulations were conducted. Finally, selected compounds' ADMET properties were determined using ADMETlab 2.0 web tool. Ultimately, one novel natural compound with potential agonistic activity (COCONUT IDs: CNP0450901) for A2AR and one antagonist/inverse agonist (rauwolscine) for A2BR were identified.

作为腺苷 2a 和 2b 受体配体的天然化合物的筛选和毒性评估:分子对接、动力学和 ADMET 分析的启示。
最近的研究表明,高血压、心肌梗塞、缺血性损伤、心力衰竭、心律失常和动脉粥样硬化等心血管疾病的免疫和炎症反应可能会受到腺苷系统变化的影响。腺苷的药理调节是通过其受体亚型实现的。在大量临床前研究中,激活腺苷受体 2A(A2AR)或阻断腺苷受体 2B(A2BR)已显示出治疗心血管疾病的良好效果。本默克研究旨在找出能激活 A2AR 或阻断 A2BR 而不会引起毒性的潜在天然化合物。利用开放天然产物数据库(COCONUT)或天然产物活性和物种来源数据库(NPASS)筛选天然化合物,以找到 A2AR 的激动剂或 A2BR 的拮抗剂/反激动剂。然后根据这些化合物的毒性特征对其进行预过滤。对剩余化合物进行了针对 A2AR 和 A2BR 的分子对接,然后进行了分子动力学模拟。最后,利用 ADMETlab 2.0 网络工具确定了所选化合物的 ADMET 特性。最终,确定了一种对 A2AR 具有潜在激动活性的新型天然化合物(COCONUT IDs:CNP0450901)和一种对 A2BR 具有拮抗/反向激动活性的化合物(rauwolscine)。
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来源期刊
Drug and Chemical Toxicology
Drug and Chemical Toxicology 医学-毒理学
CiteScore
6.00
自引率
3.80%
发文量
99
审稿时长
3 months
期刊介绍: Drug and Chemical Toxicology publishes full-length research papers, review articles and short communications that encompass a broad spectrum of toxicological data surrounding risk assessment and harmful exposure. Manuscripts are considered according to their relevance to the journal. Topics include both descriptive and mechanics research that illustrates the risk assessment implications of exposure to toxic agents. Examples of suitable topics include toxicological studies, which are structural examinations on the effects of dose, metabolism, and statistical or mechanism-based approaches to risk assessment. New findings and methods, along with safety evaluations, are also acceptable. Special issues may be reserved to publish symposium summaries, reviews in toxicology, and overviews of the practical interpretation and application of toxicological data.
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