Donald H Pfister, Katherine F LoBuglio, Michael Bradshaw, Renée Lebeuf, Andrus Voitk
{"title":"<i>Peziza nivalis</i> and relatives-spring fungi of wide distribution.","authors":"Donald H Pfister, Katherine F LoBuglio, Michael Bradshaw, Renée Lebeuf, Andrus Voitk","doi":"10.1080/00275514.2024.2370198","DOIUrl":null,"url":null,"abstract":"<p><p>Several members of the genus <i>Peziza</i> sensu stricto occur at the edge of melting snow. These nivicolous species have been widely reported in the Northern Hemisphere and are also known from Australia and New Zealand. We have used 16 specimens from North America and Australia to study morphology and to perform DNA sequencing. In sequence analyses, we have used ITS1 and ITS2 (internal transcribed spacers), 28S, <i>RPB2</i> (RNA polymerase II gene), and two genes new to these studies, <i>GAPDH</i> (glyceraldehyde-3-phosphate dehydrogenase) and <i>HSP90</i> (heat shock protein 90). Although not all regions are available for all samples, we have recognized the following species: <i>Peziza heimii, P. nivalis</i>, and <i>P. nivis</i>. Phylogenetic analyses were done using ITS alone; combined ITS1-5.8S-ITS2, 28S, and <i>RPB2</i>; ITS, and 28S, <i>RPB2, GAPDH</i>, and <i>HSP90</i>. Even with this augmented set of genes and despite their widespread occurrence in North America, Europe, Australia, and New Zealand, we have not definitively distinguished species within this group. To assess these results, pairwise homoplasy index (PHI) analysis was employed. This showed evidence of recombination among the samples of <i>P. nivalis</i> and further supports the view of <i>P. nivalis</i> as a monophyletic cosmopolitan species. As part of this study, we also examined the variation in ITS copies in <i>P. echinospora</i>, for which a genome is available.</p>","PeriodicalId":18779,"journal":{"name":"Mycologia","volume":" ","pages":"1019-1032"},"PeriodicalIF":2.6000,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mycologia","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/00275514.2024.2370198","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/8/19 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"MYCOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Several members of the genus Peziza sensu stricto occur at the edge of melting snow. These nivicolous species have been widely reported in the Northern Hemisphere and are also known from Australia and New Zealand. We have used 16 specimens from North America and Australia to study morphology and to perform DNA sequencing. In sequence analyses, we have used ITS1 and ITS2 (internal transcribed spacers), 28S, RPB2 (RNA polymerase II gene), and two genes new to these studies, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) and HSP90 (heat shock protein 90). Although not all regions are available for all samples, we have recognized the following species: Peziza heimii, P. nivalis, and P. nivis. Phylogenetic analyses were done using ITS alone; combined ITS1-5.8S-ITS2, 28S, and RPB2; ITS, and 28S, RPB2, GAPDH, and HSP90. Even with this augmented set of genes and despite their widespread occurrence in North America, Europe, Australia, and New Zealand, we have not definitively distinguished species within this group. To assess these results, pairwise homoplasy index (PHI) analysis was employed. This showed evidence of recombination among the samples of P. nivalis and further supports the view of P. nivalis as a monophyletic cosmopolitan species. As part of this study, we also examined the variation in ITS copies in P. echinospora, for which a genome is available.
期刊介绍:
International in coverage, Mycologia presents recent advances in mycology, emphasizing all aspects of the biology of Fungi and fungus-like organisms, including Lichens, Oomycetes and Slime Molds. The Journal emphasizes subjects including applied biology, biochemistry, cell biology, development, ecology, evolution, genetics, genomics, molecular biology, morphology, new techniques, animal or plant pathology, phylogenetics, physiology, aspects of secondary metabolism, systematics, and ultrastructure. In addition to research articles, reviews and short notes, Mycologia also includes invited papers based on presentations from the Annual Conference of the Mycological Society of America, such as Karling Lectures or Presidential Addresses.