{"title":"Disease trend analysis platform accurately predicts the occurrence of cervical cancer under mixed diseases","authors":"Yuchao Liang , Yuting Guo , Yifei Zhai , Jian Zhou , Wuritu Yang , Yongchun Zuo","doi":"10.1016/j.ymeth.2024.07.011","DOIUrl":null,"url":null,"abstract":"<div><p>Cervical cancer (CC) is one of the most common gynecological malignancies. Cytological screening, while being the most common and accurate method for detecting cervical cancer, is both time-consuming and costly. Predicting CC based on bioinformatics can assist in the rapid early screening of CC in clinical practice. Most recent CC prediction methods require a large amount of detection data or sequencing data and are not ideal for CC detection in complex disease samples. We developed the Disease trend analysis platform (Dtap), which can quickly predict the occurrence of diseases using only blood routine data. Blood routine data was collected from 1,292 cervical cancer patients, 4,860 patients with complex diseases, and 4,980 healthy individuals from various sources. The results show that the Dtap-based trend model maintained good and stable performance in the prediction task of multiple datasets as well as complex disease samples. Finally, we built DTAPCC (<span><span>http://bioinfor.imu.edu.cn/dtapcc</span><svg><path></path></svg></span>), a Dtap-based CC disease prediction platform, to help users quickly predict CC and visualize trend features.</p></div>","PeriodicalId":390,"journal":{"name":"Methods","volume":"230 ","pages":"Pages 108-115"},"PeriodicalIF":4.2000,"publicationDate":"2024-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Methods","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1046202324001804","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
Cervical cancer (CC) is one of the most common gynecological malignancies. Cytological screening, while being the most common and accurate method for detecting cervical cancer, is both time-consuming and costly. Predicting CC based on bioinformatics can assist in the rapid early screening of CC in clinical practice. Most recent CC prediction methods require a large amount of detection data or sequencing data and are not ideal for CC detection in complex disease samples. We developed the Disease trend analysis platform (Dtap), which can quickly predict the occurrence of diseases using only blood routine data. Blood routine data was collected from 1,292 cervical cancer patients, 4,860 patients with complex diseases, and 4,980 healthy individuals from various sources. The results show that the Dtap-based trend model maintained good and stable performance in the prediction task of multiple datasets as well as complex disease samples. Finally, we built DTAPCC (http://bioinfor.imu.edu.cn/dtapcc), a Dtap-based CC disease prediction platform, to help users quickly predict CC and visualize trend features.
宫颈癌(CC)是最常见的妇科恶性肿瘤之一。细胞学筛查是检测宫颈癌最常用、最准确的方法,但耗时长、费用高。基于生物信息学的 CC 预测有助于在临床实践中对 CC 进行快速早期筛查。最近的大多数 CC 预测方法都需要大量的检测数据或测序数据,对于复杂疾病样本中的 CC 检测并不理想。我们开发了疾病趋势分析平台(Dtap),只需使用血常规数据就能快速预测疾病的发生。我们从不同渠道收集了 1,292 名宫颈癌患者、4,860 名复杂疾病患者和 4,980 名健康人的血常规数据。结果表明,基于 Dtap 的趋势模型在多个数据集以及复杂疾病样本的预测任务中保持了良好而稳定的性能。最后,我们建立了基于 Dtap 的 CC 疾病预测平台 DTAPCC (http://bioinfor.imu.edu.cn/dtapcc),帮助用户快速预测 CC 并可视化趋势特征。
期刊介绍:
Methods focuses on rapidly developing techniques in the experimental biological and medical sciences.
Each topical issue, organized by a guest editor who is an expert in the area covered, consists solely of invited quality articles by specialist authors, many of them reviews. Issues are devoted to specific technical approaches with emphasis on clear detailed descriptions of protocols that allow them to be reproduced easily. The background information provided enables researchers to understand the principles underlying the methods; other helpful sections include comparisons of alternative methods giving the advantages and disadvantages of particular methods, guidance on avoiding potential pitfalls, and suggestions for troubleshooting.