A CNN model for early detection of pepper Phytophthora blight using multispectral imaging, integrating spectral and textural information.

IF 4.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Zhijuan Duan, Haoqian Li, Chenguang Li, Jun Zhang, Dongfang Zhang, Xiaofei Fan, Xueping Chen
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引用次数: 0

Abstract

Background: Pepper Phytophthora blight is a devastating disease during the growth process of peppers, significantly affecting their yield and quality. Accurate, rapid, and non-destructive early detection of pepper Phytophthora blight is of great importance for pepper production management. This study investigated the possibility of using multispectral imaging combined with machine learning to detect Phytophthora blight in peppers. Peppers were divided into two groups: one group was inoculated with Phytophthora blight, and the other was left untreated as a control. Multispectral images were collected at 0-h samples before inoculation and at 48, 60, 72, and 84 h after inoculation. The supporting software of the multispectral imaging system was used to extract spectral features from 19 wavelengths, and textural features were extracted using a gray-level co-occurrence matrix (GLCM) and a local binary pattern (LBP). The principal component analysis (PCA), successive projection algorithm (SPA), and genetic algorithm (GA) were used for feature selection from the extracted spectral and textural features. Two classification models were established based on effective single spectral features and significant spectral textural fusion features: a partial least squares discriminant analysis (PLS_DA) and one-dimensional convolutional neural network (1D-CNN). A two-dimensional convolutional neural network (2D-CNN) was constructed based on five principal component (PC) coefficients extracted from the spectral data using PCA, weighted, and summed with 19-channel multispectral images to create new PC images.

Results: The results indicated that the models using PCA for feature selection exhibit relatively stable classification performance. The accuracy of PLS-DA and 1D-CNN based on single spectral features is 82.6% and 83.3%, respectively, at the 48h mark. In contrast, the accuracy of PLS-DA and 1D-CNN based on spectral texture fusion reached 85.9% and 91.3%, respectively, at the same 48h mark. The accuracy of the 2D-CNN based on 5 PC images is 82%.

Conclusions: The research indicates that Phytophthora blight infection can be detected 48 h after inoculation (36 h before visible symptoms). This study provides an effective method for the early detection of Phytophthora blight in peppers.

利用多光谱成像技术,整合光谱和纹理信息,建立一个用于早期检测辣椒疫霉病的 CNN 模型。
背景:辣椒疫霉病是辣椒生长过程中的一种毁灭性病害,严重影响辣椒的产量和质量。准确、快速、无损地早期检测辣椒疫霉病对辣椒生产管理具有重要意义。本研究探讨了利用多光谱成像技术结合机器学习检测辣椒疫霉病的可能性。研究人员将辣椒分为两组:一组接种疫霉菌,另一组不作处理作为对照。在接种前的 0 h 样本和接种后的 48、60、72 和 84 h 样本处采集多光谱图像。使用多光谱成像系统的辅助软件从 19 个波长中提取光谱特征,并使用灰度级共现矩阵(GLCM)和局部二值模式(LBP)提取纹理特征。主成分分析(PCA)、连续投影算法(SPA)和遗传算法(GA)用于从提取的光谱和纹理特征中进行特征选择。根据有效的单一光谱特征和重要的光谱纹理融合特征建立了两种分类模型:偏最小二乘判别分析(PLS_DA)和一维卷积神经网络(1D-CNN)。二维卷积神经网络(2D-CNN)是根据使用 PCA 从光谱数据中提取的五个主成分(PC)系数构建的,经过加权后与 19 道多光谱图像相加,生成新的 PC 图像:结果表明,使用 PCA 进行特征选择的模型表现出相对稳定的分类性能。基于单一光谱特征的 PLS-DA 和 1D-CNN 在 48 小时内的准确率分别为 82.6% 和 83.3%。相比之下,基于光谱纹理融合的 PLS-DA 和 1D-CNN 的准确率在 48 小时内分别达到了 85.9% 和 91.3%。基于 5 幅 PC 图像的 2D-CNN 的准确率为 82%:研究表明,接种后 48 小时(即出现明显症状前 36 小时)即可检测到疫霉感染。这项研究为早期检测辣椒疫霉病提供了一种有效的方法。
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来源期刊
Plant Methods
Plant Methods 生物-植物科学
CiteScore
9.20
自引率
3.90%
发文量
121
审稿时长
2 months
期刊介绍: Plant Methods is an open access, peer-reviewed, online journal for the plant research community that encompasses all aspects of technological innovation in the plant sciences. There is no doubt that we have entered an exciting new era in plant biology. The completion of the Arabidopsis genome sequence, and the rapid progress being made in other plant genomics projects are providing unparalleled opportunities for progress in all areas of plant science. Nevertheless, enormous challenges lie ahead if we are to understand the function of every gene in the genome, and how the individual parts work together to make the whole organism. Achieving these goals will require an unprecedented collaborative effort, combining high-throughput, system-wide technologies with more focused approaches that integrate traditional disciplines such as cell biology, biochemistry and molecular genetics. Technological innovation is probably the most important catalyst for progress in any scientific discipline. Plant Methods’ goal is to stimulate the development and adoption of new and improved techniques and research tools and, where appropriate, to promote consistency of methodologies for better integration of data from different laboratories.
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