Transfer learning may explain pigeons' ability to detect cancer in histopathology.

IF 3.1 3区 计算机科学 Q1 ENGINEERING, MULTIDISCIPLINARY
Oz Kilim, János Báskay, András Biricz, Zsolt Bedőházi, Péter Pollner, István Csabai
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引用次数: 0

Abstract

Pigeons' unexpected competence in learning to categorize unseen histopathological images has remained an unexplained discovery for almost a decade (Levensonet al2015PLoS One10e0141357). Could it be that knowledge transferred from their bird's-eye views of the earth's surface gleaned during flight contributes to this ability? Employing a simulation-based verification strategy, we recapitulate this biological phenomenon with a machine-learning analog. We model pigeons' visual experience during flight with the self-supervised pre-training of a deep neural network on BirdsEyeViewNet; our large-scale aerial imagery dataset. As an analog of the differential food reinforcement performed in Levensonet al's study 2015PLoS One10e0141357), we apply transfer learning from this pre-trained model to the same Hematoxylin and Eosin (H&E) histopathology and radiology images and tasks that the pigeons were trained and tested on. The study demonstrates that pre-training neural networks with bird's-eye view data results in close agreement with pigeons' performance. These results support transfer learning as a reasonable computational model of pigeon representation learning. This is further validated with six large-scale downstream classification tasks using H&E stained whole slide image datasets representing diverse cancer types.

迁移学习可以解释鸽子在组织病理学中检测癌症的能力。
近十年来,鸽子在学习对未见过的组织病理学图像进行分类方面出人意料的能力一直是一个无法解释的发现。难道是它们在飞行过程中鸟瞰地球表面所获得的知识促成了这种能力?我们采用了一种基于模拟的验证策略,用机器学习类比法重新演绎了这一生物现象。我们通过在大规模航空图像数据集 BirdsEyeViewNet(BEVNet)上对深度神经网络进行自我监督预训练,来模拟鸽子在飞行过程中的视觉体验。与莱文森等人的研究中进行的差别食物强化类似,我们将这一预训练模型的迁移学习应用于相同的苏木精和伊红 H&E 组织病理学和放射学图像以及鸽子接受训练和测试的任务。研究表明,用鸟瞰数据预训练神经网络的结果与鸽子的表现非常接近。这些结果支持将迁移学习作为鸽子表征学习的合理计算模型。使用代表不同癌症类型的 H&E 染色全切片图像(WSI)数据集进行的六项大规模下游分类任务进一步验证了这一点。
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来源期刊
Bioinspiration & Biomimetics
Bioinspiration & Biomimetics 工程技术-材料科学:生物材料
CiteScore
5.90
自引率
14.70%
发文量
132
审稿时长
3 months
期刊介绍: Bioinspiration & Biomimetics publishes research involving the study and distillation of principles and functions found in biological systems that have been developed through evolution, and application of this knowledge to produce novel and exciting basic technologies and new approaches to solving scientific problems. It provides a forum for interdisciplinary research which acts as a pipeline, facilitating the two-way flow of ideas and understanding between the extensive bodies of knowledge of the different disciplines. It has two principal aims: to draw on biology to enrich engineering and to draw from engineering to enrich biology. The journal aims to include input from across all intersecting areas of both fields. In biology, this would include work in all fields from physiology to ecology, with either zoological or botanical focus. In engineering, this would include both design and practical application of biomimetic or bioinspired devices and systems. Typical areas of interest include: Systems, designs and structure Communication and navigation Cooperative behaviour Self-organizing biological systems Self-healing and self-assembly Aerial locomotion and aerospace applications of biomimetics Biomorphic surface and subsurface systems Marine dynamics: swimming and underwater dynamics Applications of novel materials Biomechanics; including movement, locomotion, fluidics Cellular behaviour Sensors and senses Biomimetic or bioinformed approaches to geological exploration.
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