Computer-aided diagnosis system for grading brain tumor using histopathology images based on color and texture features.

IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING
Naira Elazab, Wael Gab Allah, Mohammed Elmogy
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引用次数: 0

Abstract

Background: Cancer pathology shows disease development and associated molecular features. It provides extensive phenotypic information that is cancer-predictive and has potential implications for planning treatment. Based on the exceptional performance of computational approaches in the field of digital pathogenic, the use of rich phenotypic information in digital pathology images has enabled us to identify low-level gliomas (LGG) from high-grade gliomas (HGG). Because the differences between the textures are so slight, utilizing just one feature or a small number of features produces poor categorization results.

Methods: In this work, multiple feature extraction methods that can extract distinct features from the texture of histopathology image data are used to compare the classification outcomes. The successful feature extraction algorithms GLCM, LBP, multi-LBGLCM, GLRLM, color moment features, and RSHD have been chosen in this paper. LBP and GLCM algorithms are combined to create LBGLCM. The LBGLCM feature extraction approach is extended in this study to multiple scales using an image pyramid, which is defined by sampling the image both in space and scale. The preprocessing stage is first used to enhance the contrast of the images and remove noise and illumination effects. The feature extraction stage is then carried out to extract several important features (texture and color) from histopathology images. Third, the feature fusion and reduction step is put into practice to decrease the number of features that are processed, reducing the computation time of the suggested system. The classification stage is created at the end to categorize various brain cancer grades. We performed our analysis on the 821 whole-slide pathology images from glioma patients in the Cancer Genome Atlas (TCGA) dataset. Two types of brain cancer are included in the dataset: GBM and LGG (grades II and III). 506 GBM images and 315 LGG images are included in our analysis, guaranteeing representation of various tumor grades and histopathological features.

Results: The fusion of textural and color characteristics was validated in the glioma patients using the 10-fold cross-validation technique with an accuracy equals to 95.8%, sensitivity equals to 96.4%, DSC equals to 96.7%, and specificity equals to 97.1%. The combination of the color and texture characteristics produced significantly better accuracy, which supported their synergistic significance in the predictive model. The result indicates that the textural characteristics can be an objective, accurate, and comprehensive glioma prediction when paired with conventional imagery.

Conclusion: The results outperform current approaches for identifying LGG from HGG and provide competitive performance in classifying four categories of glioma in the literature. The proposed model can help stratify patients in clinical studies, choose patients for targeted therapy, and customize specific treatment schedules.

基于颜色和纹理特征使用组织病理学图像对脑肿瘤进行分级的计算机辅助诊断系统。
背景:癌症病理学显示了疾病的发展和相关的分子特征。它提供了大量可预测癌症的表型信息,对制定治疗计划具有潜在意义。基于计算方法在数字病理领域的卓越表现,利用数字病理图像中丰富的表型信息,我们能够识别低级别胶质瘤(LGG)和高级别胶质瘤(HGG)。由于纹理之间的差异非常微小,仅利用一种特征或少量特征会产生较差的分类结果:在这项工作中,我们使用了多种特征提取方法,这些方法可以从组织病理学图像数据的纹理中提取不同的特征,并对分类结果进行比较。本文选择了成功的特征提取算法 GLCM、LBP、multi-LBGLCM、GLRLM、色矩特征和 RSHD。LBP 算法与 GLCM 算法相结合,形成了 LBGLCM。本研究将 LBGLCM 特征提取方法扩展到使用图像金字塔的多尺度图像,图像金字塔是通过在空间和尺度上对图像进行采样而定义的。预处理阶段首先用于增强图像的对比度,消除噪声和光照影响。然后是特征提取阶段,从组织病理学图像中提取几个重要特征(纹理和颜色)。第三,实施特征融合和缩减步骤,以减少处理的特征数量,从而缩短建议系统的计算时间。最后是分类阶段,对各种脑癌等级进行分类。我们对癌症基因组图谱(TCGA)数据集中来自胶质瘤患者的 821 张全片病理图像进行了分析。数据集中包括两种类型的脑癌:GBM和LGG(II级和III级)。我们的分析包括 506 张 GBM 图像和 315 张 LGG 图像,保证了各种肿瘤等级和组织病理学特征的代表性:采用 10 倍交叉验证技术对胶质瘤患者进行了纹理和颜色特征融合验证,准确率为 95.8%,灵敏度为 96.4%,DSC 为 96.7%,特异性为 97.1%。颜色和纹理特征的组合产生了明显更好的准确性,这支持了它们在预测模型中的协同作用。结果表明,纹理特征与传统图像搭配使用,可以客观、准确、全面地预测胶质瘤:结论:在从HGG中识别LGG方面,研究结果优于现有方法,在文献中对四类胶质瘤的分类方面也具有竞争力。所提出的模型有助于在临床研究中对患者进行分层,选择接受靶向治疗的患者,并定制特定的治疗方案。
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来源期刊
BMC Medical Imaging
BMC Medical Imaging RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING-
CiteScore
4.60
自引率
3.70%
发文量
198
审稿时长
27 weeks
期刊介绍: BMC Medical Imaging is an open access journal publishing original peer-reviewed research articles in the development, evaluation, and use of imaging techniques and image processing tools to diagnose and manage disease.
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